Hello Thon, Thanks for reporting this. This issue was corrected 2 weeks ago, but unfortunately just missed the cutoff for the last Galaxy release. It will be available in the next release currently planned for next week.
Greg Von Kuster On Jan 3, 2013, at 6:18 PM, Anthonius deBoer wrote: > > Hi, > > I installed PICARD from the main tool shed in the latest update from > galaxy-dist and when I clicked on the picard installed dependency link in the > admin tool, I got this... > > > > Error Traceback: > View as: Interactive | Text | XML (full) > ⇝ TypeError: 'NoneType' object is not iterable > URL: > http://srv151/admin_toolshed/browse_tool_dependency?repository_id=a799d38679e985db&id=f597429621d6eb2b > Module weberror.evalexception.middleware:364 in respond view > >> app_iter = self.application(environ, detect_start_response) > Module paste.debug.prints:98 in __call__ view > >> environ, self.app) > Module paste.wsgilib:539 in intercept_output view > >> app_iter = application(environ, replacement_start_response) > Module paste.recursive:80 in __call__ view > >> return self.application(environ, start_response) > Module galaxy.web.framework.middleware.remoteuser:91 in __call__ view > >> return self.app( environ, start_response ) > Module paste.httpexceptions:632 in __call__ view > >> return self.application(environ, start_response) > Module galaxy.web.framework.base:160 in __call__ view > >> body = method( trans, **kwargs ) > Module galaxy.web.framework:206 in decorator view > >> return func( self, trans, *args, **kwargs ) > Module galaxy.webapps.galaxy.controllers.admin_toolshed:422 in > browse_tool_dependency view > >> tool_dependency.error_message = suc.to_safe_string( > >> tool_dependency.error_message ) > Module galaxy.util.shed_util_common:2138 in to_safe_string view > >> for c in text: > TypeError: 'NoneType' object is not iterable > > > > Extra Features > >> Display the lines of code near each part of the traceback > Show a debug prompt to allow you to directly debug the code at the > traceback > > I also found I always have to restart GALAXY after I install something from > the toolshed otherwise I get this: > > Tool > 'toolshed.g2.bx.psu.edu/repos/brad-chapman/bam_to_bigwig/bam_to_bigwig/0.1.0' > does not exist, kwd={} > > I have to restart galaxy (updating the metadata in the admin does not fix > this..) > > Any ideas? > > Thon > ___________________________________________________________ > Please keep all replies on the list by using "reply all" > in your mail client. To manage your subscriptions to this > and other Galaxy lists, please use the interface at: > > http://lists.bx.psu.edu/
___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
