Bodged using string functions :-) set $data = ''.join([line for line in ($seq_source_type.seq_paste.split()) if line[0] != ">"])
Removes the fasta header line and any white-space so I can pipe sequence directly to blastn. Means users can quickly paste in a bit of sequence for blasting without first having to upload the data to their history. --Russell -- From: galaxy-dev-boun...@lists.bx.psu.edu [mailto:galaxy-dev-boun...@lists.bx.psu.edu] On Behalf Of Ross Sent: Wednesday, 13 February 2013 1:34 p.m. To: galaxy-dev@lists.bx.psu.edu Subject: [galaxy-dev] Fwd: Custom Cheetah filters? Hi Russell, There may be a better way, but this works for me in the Toolfactory to create space and special character free names? <param name="foo" type="text" value="" label="Foo"> <sanitizer invalid_char=""> <valid initial="string.letters,string.digits"/> </sanitizer> </param> On Wed, Feb 13, 2013 at 11:22 AM, Smithies, Russell <russell.smith...@agresearch.co.nz<mailto:russell.smith...@agresearch.co.nz>> wrote: I want to add a filter to strip whitespace and newlines from a text input box so I can pipe the sanitized string to a command. Documentation is a bit sparse (and my Python a bit basic) so does anyone have an example? Perhaps there's a better way of doing it - regex maybe? Any ideas? Thanx, --Russell -- ======================================================================= Attention: The information contained in this message and/or attachments from AgResearch Limited is intended only for the persons or entities to which it is addressed and may contain confidential and/or privileged material. Any review, retransmission, dissemination or other use of, or taking of any action in reliance upon, this information by persons or entities other than the intended recipients is prohibited by AgResearch Limited. If you have received this message in error, please notify the sender immediately. =======================================================================
___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
