Hello Carlos, The cause of the server error is a tool shed issue which I've corrected, so you should now be able to install the gmap repository. I've installed the repository locally and it seems to be ok (althoug I haven't executed contained tools), but it's in a strange state in the tool shed probably because all of it's contents were deleted except the tool_dependencies.xml file in the repository tip:
Changeset 6adc485b6dc0 added: tool_dependencies.xml removed: README gmap.xml gmap_build.xml gsnap.xml iit_store.xml lib/galaxy/datatypes/gmap.py snpindex.xml tool-data/datatypes_conf.xml tool-data/gmap_indices.loc.sample You can contact the repository owner via the "Contact repository owner" option in the "Repository Actions" pop-up menu when viewing the repository. Greg Von Kuster On Oct 24, 2012, at 12:27 PM, Carlos Borroto wrote: > Hi, > > I get a "HTTPError: HTTP Error 500: Internal Server Error"(see full > error trace below) when trying to install GMAP from the main toolshed. > Is there a way to report this to the tool authors? > > Thanks, > Carlos > > URL: > http://galaxy.bfx.brel.local/admin_toolshed/prepare_for_install?tool_shed_url=http://toolshed.g2.bx.psu.edu/&repository_ids=4131098bea459833&changeset_revisions=561503a442f0 > File > '/local/opt/galaxy/galaxy-dist/eggs/WebError-0.8a-py2.6.egg/weberror/evalexception/middleware.py', > line 364 in respond > app_iter = self.application(environ, detect_start_response) > File > '/local/opt/galaxy/galaxy-dist/eggs/Paste-1.6-py2.6.egg/paste/debug/prints.py', > line 98 in __call__ > environ, self.app) > File > '/local/opt/galaxy/galaxy-dist/eggs/Paste-1.6-py2.6.egg/paste/wsgilib.py', > line 539 in intercept_output > app_iter = application(environ, replacement_start_response) > File > '/local/opt/galaxy/galaxy-dist/eggs/Paste-1.6-py2.6.egg/paste/recursive.py', > line 80 in __call__ > return self.application(environ, start_response) > File > '/local/opt/galaxy/galaxy-dist/lib/galaxy/web/framework/middleware/remoteuser.py', > line 91 in __call__ > return self.app( environ, start_response ) > File > '/local/opt/galaxy/galaxy-dist/eggs/Paste-1.6-py2.6.egg/paste/httpexceptions.py', > line 632 in __call__ > return self.application(environ, start_response) > File '/local/opt/galaxy/galaxy-dist/lib/galaxy/web/framework/base.py', > line 160 in __call__ > body = method( trans, **kwargs ) > File '/local/opt/galaxy/galaxy-dist/lib/galaxy/web/framework/__init__.py', > line 205 in decorator > return func( self, trans, *args, **kwargs ) > File > '/local/opt/galaxy/galaxy-dist/lib/galaxy/webapps/galaxy/controllers/admin_toolshed.py', > line 1178 in prepare_for_install > response = urllib2.urlopen( url ) > File '/usr/lib64/python2.6/urllib2.py', line 126 in urlopen > return _opener.open(url, data, timeout) > File '/usr/lib64/python2.6/urllib2.py', line 397 in open > response = meth(req, response) > File '/usr/lib64/python2.6/urllib2.py', line 510 in http_response > 'http', request, response, code, msg, hdrs) > File '/usr/lib64/python2.6/urllib2.py', line 435 in error > return self._call_chain(*args) > File '/usr/lib64/python2.6/urllib2.py', line 369 in _call_chain > result = func(*args) > File '/usr/lib64/python2.6/urllib2.py', line 518 in http_error_default > raise HTTPError(req.get_full_url(), code, msg, hdrs, fp) > HTTPError: HTTP Error 500: Internal Server Error > ___________________________________________________________ > Please keep all replies on the list by using "reply all" > in your mail client. To manage your subscriptions to this > and other Galaxy lists, please use the interface at: > > http://lists.bx.psu.edu/
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