So from what I am reading it is either not creating or prematurely
deleting this working directory? I will mod that option and see if I can
prevent it from deleting.
AC
On 11/12/2012 2:11 PM, Nate Coraor wrote:
On Nov 12, 2012, at 11:17 AM, Alan V. Cowles wrote:
yeah I'm not seeing the
On Nov 6, 2012, at 2:44 PM, Alan V. Cowles wrote:
same error without the symlink, this time with actual syntax:
galaxy.jobs ERROR 2012-11-06 14:41:06,596 (11) Failed to change ownership of
/usr/local/galaxy/galaxy-dist/database/job_working_directory/000/11, failing
Hi Alan,
You're using
On Nov 12, 2012, at 11:17 AM, Alan V. Cowles wrote:
yeah I'm not seeing the folder 11, I have a folder 2 created july 19...
(galaxy_env)-bash-4.1$ pwd
/usr/local/galaxy/galaxy-dist/database/job_working_directory/000
(galaxy_env)-bash-4.1$ ls -al
total 12
drwxrwxr-x 3 galaxy galaxy
I tossed the symlink and mounted the san:/vol/galaxy_sata/data/galaxy to
/usr/local/galaxy, though we use symlinks daily for practically all of
our softwares and programs practically invisibly, but I am happy to try
anything to get it going.
AC
On 11/06/2012 02:12 PM, Dave Clements wrote:
We are using NFS3 for our mounts as we have local private networks... so
it shouldn't be the problem that you are referring to, and I don't think
it's a lack of space in temp, as the files in some form or another are
making it into the /data/001 folder...
AC
On 11/7/2012 3:53 AM, Joachim
same error without the symlink, this time with actual syntax:
galaxy.jobs ERROR 2012-11-06 14:41:06,596 (11) Failed to change
ownership of
/usr/local/galaxy/galaxy-dist/database/job_working_directory/000/11, failing
Traceback (most recent call last):
File
Hi Alan,
I'm CC'ing the Galaxy-Dev list on my response to your question.
I talked with Jen Jackson on this. Her suggestion is that the symlink is
most likely the problem somehow - this time. When in doubt, getting rid of
these good place to start. So recommended starting solution to try - use
