Re: [galaxy-dev] Help writing a tool

2012-03-20 Thread Mark Johnson
On 3/19/12 5:19 PM, Peter Cock wrote: Why do you need to do anything special at all for Galaxy here? I'd just write it as a single command line call which blocks. As far as Galaxy will know it is just a slow tool. I suppose the tool could just poll the server, and only produce results when t

Re: [galaxy-dev] Help writing a tool

2012-03-20 Thread Hans-Rudolf Hotz
On 03/19/2012 10:19 PM, Peter Cock wrote: On Mon, Mar 19, 2012 at 8:41 PM, Mark Johnson wrote: I'm writing some tools to integrate NCBI data resources with Galaxy. I have two questions. The first is simple. I want to write a tool for a long-running process that is handled by some other sched

Re: [galaxy-dev] Help writing a tool

2012-03-19 Thread Peter Cock
On Mon, Mar 19, 2012 at 8:41 PM, Mark Johnson wrote: > I'm writing some tools to integrate NCBI data resources with Galaxy. I have > two questions. > > The first is simple. I want to write a tool for a long-running process that > is handled by some other scheduler, and that produces its own job id