Hi,
Try this :
55 21 * * * cd /media/Store/galaxy/galaxy-dist/ && python
scripts/cleanup_datasets/cleanup_datasets.py config/galaxy.ini -d 30 -1
-i >> /media/Store/galaxy/galaxy-dist/temp 2>&1
I thought you need to be in the galaxy-dist folder when launching the
commands.
Best,
Geert
On 11/19/2014 11:14 PM, James Mullan wrote:
Hello,
I am trying to figure out how to run the cleanup scripts in a
cron job. The below works on command line:
python scripts/cleanup_datasets/cleanup_datasets.py config/galaxy.ini
-d 30 -1 -i
pysqlite>=2 egg successfully loaded for sqlite dialect
##########################################
# 2014-11-19 22:07:32 - Handling stuff older than 30 days
# Displaying info only ( --info_only )
Deleted 0 histories
Elapsed time: 0.0684289932251
##########################################
but if I try to do this in a cron job as follows:
55 21 * * * python scripts/cleanup_datasets/cleanup_datasets.py
config/galaxy.ini -d 30 -1 -i >> /media/Store/galaxy/galaxy-dist/temp 2>&1
python: can't open file
'scripts/cleanup_datasets/cleanup_datasets.py': [Errno 2] No such file
or directory
or if I try to do this :
00 22 * * * python
/media/Store/galaxy/galaxy-dist/scripts/cleanup_datasets/cleanup_datasets.py
config/galaxy.ini -d 30 -1 -i >> /media/Store/galaxy/galaxy-dist/temp 2>&1
Traceback (most recent call last):
File
"/media/Store/galaxy/galaxy-dist/scripts/cleanup_datasets/cleanup_datasets.py",
line 13, in <module>
from galaxy import eggs
ImportError: No module named galaxy
Note that I am directing the output to a file only to try to find out
why it's not working.
Is this a problem with environment?
Any suggestions what to try would be much appreciated.
Regards
James
J P Mullan
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--
Geert Vandeweyer, Ph.D.
Department of Medical Genetics
University of Antwerp
Prins Boudewijnlaan 43
2650 Edegem
Belgium
Tel: +32 (0)3 275 97 56
E-mail: geert.vandewe...@ua.ac.be
http://ua.ac.be/cognitivegenetics
http://www.linkedin.com/in/geertvandeweyer
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