On Sep 4, 2014, at 2:44 PM, Iry Witham <iry.wit...@jax.org> wrote: > Hi Team, > > I have upgraded to the latest galaxy distribution on my test server. Now I > am running into issues and can't figure this one out. I am attempting to run > the join.py tool to join two datasets at specified fields. I am getting the > following error: > > Traceback (most recent call last): > File "/hpcdata/galaxy-test/galaxy-setup/galaxy-dist/tools/filters/join.py", > line 18, in <module> > from galaxy.util.bunch import Bunch > File > "/hpcdata/galaxy-test/galaxy-setup/galaxy-dist/lib/galaxy/__init__.py", line > 95, in <module> > import galaxy.eggs > File > "/hpcdata/galaxy-test/galaxy-setup/galaxy-dist/lib/galaxy/eggs/__init__.py", > line 5, in <module> > import os, sys, shutil, glob, urllib, urllib2, ConfigParser, HTMLParser, > zipimport, zipfile > File "/usr/lib64/python2.6/urllib2.py", line 93, in <module> > import hashlib > File "/usr/lib64/python2.6/hashlib.py", line 88, in <module> > import _hashlib > ImportError: /usr/lib64/libssl.so.10: symbol EC_KEY_get0_group, version > OPENSSL_1.0.1_EC not defined in file libcrypto.so.10 with link time reference > Traceback (most recent call last): > File "./scripts/set_metadata.py", line 29, in <module> > from galaxy import eggs > File > "/hpcdata/galaxy-test/galaxy-setup/galaxy-dist/lib/galaxy/__init__.py", line > 95, in <module> > import galaxy.eggs > File > "/hpcdata/galaxy-test/galaxy-setup/galaxy-dist/lib/galaxy/eggs/__init__.py", > line 5, in <module> > import os, sys, shutil, glob, urllib, urllib2, ConfigParser, HTMLParser, > zipimport, zipfile > File "/usr/lib64/python2.6/urllib2.py", line 93, in <module> > import hashlib > File "/usr/lib64/python2.6/hashlib.py", line 88, in <module> > import _hashlib > ImportError: /usr/lib64/libssl.so.10: symbol EC_KEY_get0_group, version > OPENSSL_1.0.1_EC not defined in file libcrypto.so.10 with link time reference > > I am at a loss on the resolution for this. > > Thanks, > Iry
Hi Iry, It looks like your libssl and libcrypto versions are out of sync. This shouldn't happen as both are provided by the OpenSSL packages for your OS (RHEL-based 6.x?), but I see that others have encountered similar problems: https://www.centos.org/forums/viewtopic.php?f=14&t=44075 You might want to double check that your OpenSSL packages have not been replaced by versions from another source other than the official RHEL/CentOS core repositories. --nate > > > > The information in this email, including attachments, may be confidential and > is intended solely for the addressee(s). If you believe you received this > email by mistake, please notify the sender by return email as soon as > possible. > ___________________________________________________________ > Please keep all replies on the list by using "reply all" > in your mail client. To manage your subscriptions to this > and other Galaxy lists, please use the interface at: > http://lists.bx.psu.edu/ > > To search Galaxy mailing lists use the unified search at: > http://galaxyproject.org/search/mailinglists/
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