On Sep 4, 2014, at 2:44 PM, Iry Witham <iry.wit...@jax.org> wrote: > Hi Team, > > I have upgraded to the latest galaxy distribution on my test server. Now I > am running into issues and can't figure this one out. I am attempting to run > the join.py tool to join two datasets at specified fields. I am getting the > following error: > > Traceback (most recent call last): > File "/hpcdata/galaxy-test/galaxy-setup/galaxy-dist/tools/filters/join.py", > line 18, in <module> > from galaxy.util.bunch import Bunch > File > "/hpcdata/galaxy-test/galaxy-setup/galaxy-dist/lib/galaxy/__init__.py", line > 95, in <module> > import galaxy.eggs > File > "/hpcdata/galaxy-test/galaxy-setup/galaxy-dist/lib/galaxy/eggs/__init__.py", > line 5, in <module> > import os, sys, shutil, glob, urllib, urllib2, ConfigParser, HTMLParser, > zipimport, zipfile > File "/usr/lib64/python2.6/urllib2.py", line 93, in <module> > import hashlib > File "/usr/lib64/python2.6/hashlib.py", line 88, in <module> > import _hashlib > ImportError: /usr/lib64/libssl.so.10: symbol EC_KEY_get0_group, version > OPENSSL_1.0.1_EC not defined in file libcrypto.so.10 with link time reference > Traceback (most recent call last): > File "./scripts/set_metadata.py", line 29, in <module> > from galaxy import eggs > File > "/hpcdata/galaxy-test/galaxy-setup/galaxy-dist/lib/galaxy/__init__.py", line > 95, in <module> > import galaxy.eggs > File > "/hpcdata/galaxy-test/galaxy-setup/galaxy-dist/lib/galaxy/eggs/__init__.py", > line 5, in <module> > import os, sys, shutil, glob, urllib, urllib2, ConfigParser, HTMLParser, > zipimport, zipfile > File "/usr/lib64/python2.6/urllib2.py", line 93, in <module> > import hashlib > File "/usr/lib64/python2.6/hashlib.py", line 88, in <module> > import _hashlib > ImportError: /usr/lib64/libssl.so.10: symbol EC_KEY_get0_group, version > OPENSSL_1.0.1_EC not defined in file libcrypto.so.10 with link time reference > > I am at a loss on the resolution for this. > > Thanks, > Iry
Hi Iry, It looks like your libssl and libcrypto versions are out of sync. This shouldn't happen as both are provided by the OpenSSL packages for your OS (RHEL-based 6.x?), but I see that others have encountered similar problems: https://www.centos.org/forums/viewtopic.php?f=14&t=44075 You might want to double check that your OpenSSL packages have not been replaced by versions from another source other than the official RHEL/CentOS core repositories. --nate > > > > The information in this email, including attachments, may be confidential and > is intended solely for the addressee(s). If you believe you received this > email by mistake, please notify the sender by return email as soon as > possible. > ___________________________________________________________ > Please keep all replies on the list by using "reply all" > in your mail client. To manage your subscriptions to this > and other Galaxy lists, please use the interface at: > http://lists.bx.psu.edu/ > > To search Galaxy mailing lists use the unified search at: > http://galaxyproject.org/search/mailinglists/
___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/