Re: [galaxy-dev] Newer Version of Cufflinks Wrapper

2011-07-22 Thread Chorny, Ilya
I just hit reply. Would be easier if when I hit reply it automatically sent the 
email back to the list. That's how other mailing lists that.I'm on work.

Thanks for the hg info.

Thanks,

Ilya

Sent from my iPhone

On Jul 22, 2011, at 6:32 AM, Jeremy Goecks 
jeremy.goe...@emory.edumailto:jeremy.goe...@emory.edu wrote:

Ilya,

A patch is fine for a one-time fix; this is easy with Mercurial:

% hg diff  my_patch.patch

However, if you plan to contribute to Galaxy on a regular basis, we encourage 
you to fork Galaxy and maintain your own Bitbucket repository.

Finally, please send all emails to our mailing lists rather than individual 
Galaxy developers or other list members. Sending email to the mailing lists 
ensures that everyone can see and contribute to questions and issues; in 
addition, emails to mailing lists are tracked and archived so that they are 
available in the future.

Thanks,
J.


On Jul 21, 2011, at 5:16 PM, Chorny, Ilya wrote:

I would be happy to share any changes that I make. By patch do you mean a 
diff/patch share patch or just check in the code?

From: Jeremy Goecks [mailto:jeremy.goe...@emory.edu]
Sent: Wednesday, July 20, 2011 4:55 PM
To: Chorny, Ilya
Cc: mailto:galaxy-user-boun...@lists.bx.psu.edu 
galaxy-user-boun...@lists.bx.psu.edumailto:galaxy-user-boun...@lists.bx.psu.edu;
 mailto:galaxy-dev@lists.bx.psu.edu 
galaxy-dev@lists.bx.psu.edumailto:galaxy-dev@lists.bx.psu.edu
Subject: Re: [galaxy-dev] Newer Version of Cufflinks Wrapper

Ilya,

Despite the wrapper version numbers (which I'll update shortly to avoid further 
confusion), the current Cufflinks wrapper in both galaxy-central and 
galaxy-dist supports Cufflinks v1.0.3 However, not all new options for v1.0.3 
are implemented the current wrappers; should you decide to implement additional 
options in the Cufflinks/compare/diff wrappers, please consider submitting a 
patch that we could incorporate into Galaxy.

Best,
J.

On Jul 21, 2011, at 1:30 AM, Chorny, Ilya wrote:


Has anyone produced a newer version of the cufflinks wrapper? The current 
wrapper is for version 0.9.1.

Thanks,

Ilya



Ilya Chorny Ph.D.
Bioinformatics – Intern
mailto:icho...@illumina.comicho...@illumina.commailto:icho...@illumina.com
858-202-4582

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Re: [galaxy-dev] Newer Version of Cufflinks Wrapper

2011-07-20 Thread Jeremy Goecks
Ilya,

Despite the wrapper version numbers (which I'll update shortly to avoid further 
confusion), the current Cufflinks wrapper in both galaxy-central and 
galaxy-dist supports Cufflinks v1.0.3 However, not all new options for v1.0.3 
are implemented the current wrappers; should you decide to implement additional 
options in the Cufflinks/compare/diff wrappers, please consider submitting a 
patch that we could incorporate into Galaxy.

Best,
J.

On Jul 21, 2011, at 1:30 AM, Chorny, Ilya wrote:

 Has anyone produced a newer version of the cufflinks wrapper? The current 
 wrapper is for version 0.9.1.
  
 Thanks,
  
 Ilya
  
  
  
 Ilya Chorny Ph.D.
 Bioinformatics – Intern
 icho...@illumina.com
 858-202-4582
  
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