Re: [galaxy-dev] PATH env variable for SGE jobs

2011-12-04 Thread Smithies, Russell
> From: galaxy-dev-boun...@lists.bx.psu.edu [mailto:galaxy-dev- > boun...@lists.bx.psu.edu] On Behalf Of Nate Coraor > Sent: Saturday, 3 December 2011 4:42 a.m. > To: Langhorst, Brad > Cc: galaxy-dev@lists.bx.psu.edu > Subject: Re: [galaxy-dev] PATH env variable for SGE jobs >

Re: [galaxy-dev] PATH env variable for SGE jobs

2011-12-02 Thread Chorny, Ilya
Of Nate Coraor Sent: Friday, December 02, 2011 7:42 AM To: Langhorst, Brad Cc: galaxy-dev@lists.bx.psu.edu Subject: Re: [galaxy-dev] PATH env variable for SGE jobs On Dec 1, 2011, at 8:55 PM, Langhorst, Brad wrote: > I have the software for our SGE cluster (eg. Bowtie) in > /mnt/ngswork/

Re: [galaxy-dev] PATH env variable for SGE jobs

2011-12-02 Thread Nate Coraor
On Dec 1, 2011, at 8:55 PM, Langhorst, Brad wrote: > I have the software for our SGE cluster (eg. Bowtie) in > /mnt/ngswork/galaxy/sw/bin > And I've set the PATH environment in the galaxy user's .bashrc > > export PATH="/mnt/ngswork/galaxy/sw/bin:$PATH" > > When I echo $PATH via qsub as galaxy