> From: galaxy-dev-boun...@lists.bx.psu.edu [mailto:galaxy-dev-
> boun...@lists.bx.psu.edu] On Behalf Of Nate Coraor
> Sent: Saturday, 3 December 2011 4:42 a.m.
> To: Langhorst, Brad
> Cc: galaxy-dev@lists.bx.psu.edu
> Subject: Re: [galaxy-dev] PATH env variable for SGE jobs
>
Of Nate Coraor
Sent: Friday, December 02, 2011 7:42 AM
To: Langhorst, Brad
Cc: galaxy-dev@lists.bx.psu.edu
Subject: Re: [galaxy-dev] PATH env variable for SGE jobs
On Dec 1, 2011, at 8:55 PM, Langhorst, Brad wrote:
> I have the software for our SGE cluster (eg. Bowtie) in
> /mnt/ngswork/
On Dec 1, 2011, at 8:55 PM, Langhorst, Brad wrote:
> I have the software for our SGE cluster (eg. Bowtie) in
> /mnt/ngswork/galaxy/sw/bin
> And I've set the PATH environment in the galaxy user's .bashrc
>
> export PATH="/mnt/ngswork/galaxy/sw/bin:$PATH"
>
> When I echo $PATH via qsub as galaxy
