Re: [galaxy-dev] Parallel job through galaxy
On Tue, Aug 16, 2011 at 3:46 PM, Peter Cock wrote: > On Tue, Aug 16, 2011 at 11:13 AM, shashi shekhar > wrote: > > Thanks Peter for reply > > But i want to use galaxy for parallel programs like mpi and opemp .will > it > > support ?how can i configure for parallel programs ? > > Please CC the mailing list. > > Tools using openmp should be easy. MPI is more complicated. First > check you can submit test MPI jobs to PBS by hand, then setup the > job runner in Galaxy to use the same settings. > I have submitted some MPI jobs .it'sw working . but i didn't find change the number of processor in pbs script dynamically.Is there any mpi tool in Galaxy? > > Peter > ___ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
Re: [galaxy-dev] Parallel job through galaxy
On Tue, Aug 16, 2011 at 11:13 AM, shashi shekhar wrote: > Thanks Peter for reply > But i want to use galaxy for parallel programs like mpi and opemp .will it > support ?how can i configure for parallel programs ? Please CC the mailing list. Tools using openmp should be easy. MPI is more complicated. First check you can submit test MPI jobs to PBS by hand, then setup the job runner in Galaxy to use the same settings. Peter ___ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
Re: [galaxy-dev] Parallel job through galaxy
On Tue, Aug 16, 2011 at 10:49 AM, shashi shekhar wrote: > Hi All, > > I have local instance of Galaxy .I have system of very good configuration > .it has many cores and I want to use multiprocessor for some tool. Have > you added any tool which uses multiprocessor > in Galaxy ? Provide me tool name . in my system pbs is installed . How can i > use multiprocessor in Galaxy ? > > Regards > shashi shekhar See http://wiki.g2.bx.psu.edu/Admin/Config/Performance/Cluster Peter ___ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
