On Feb 29, 2012, at 11:50 AM, Michael Burrell (TOC) wrote:
> Good evening all,
>
> I am seeing the following issue when attempting to start galaxy.
>
> Traceback (most recent call last):
> File "./scripts/paster.py", line 34, in <module>
> command.run()
> File
> "/home/home/galaxy/software/galaxy-central/eggs/PasteScript-1.7.3-py2.6.egg/paste/script/command.py",
> line 84, in run
> invoke(command, command_name, options, args[1:])
> File
> "/home/home/galaxy/software/galaxy-central/eggs/PasteScript-1.7.3-py2.6.egg/paste/script/command.py",
> line 123, in invoke
> exit_code = runner.run(args)
> File
> "/home/home/galaxy/software/galaxy-central/eggs/PasteScript-1.7.3-py2.6.egg/paste/script/command.py",
> line 218, in run
> result = self.command()
> File
> "/home/home/galaxy/software/galaxy-central/eggs/PasteScript-1.7.3-py2.6.egg/paste/script/serve.py",
> line 276, in command
> relative_to=base, global_conf=vars)
> File
> "/home/home/galaxy/software/galaxy-central/eggs/PasteScript-1.7.3-py2.6.egg/paste/script/serve.py",
> line 313, in loadapp
> **kw)
> File
> "/home/home/galaxy/software/galaxy-central/eggs/PasteDeploy-1.3.3-py2.6.egg/paste/deploy/loadwsgi.py",
> line 204, in loadapp
> return loadobj(APP, uri, name=name, **kw)
> File
> "/home/home/galaxy/software/galaxy-central/eggs/PasteDeploy-1.3.3-py2.6.egg/paste/deploy/loadwsgi.py",
> line 224, in loadobj
> global_conf=global_conf)
> File
> "/home/home/galaxy/software/galaxy-central/eggs/PasteDeploy-1.3.3-py2.6.egg/paste/deploy/loadwsgi.py",
> line 248, in loadcontext
> global_conf=global_conf)
> File
> "/home/home/galaxy/software/galaxy-central/eggs/PasteDeploy-1.3.3-py2.6.egg/paste/deploy/loadwsgi.py",
> line 278, in _loadconfig
> return loader.get_context(object_type, name, global_conf)
> File
> "/home/home/galaxy/software/galaxy-central/eggs/PasteDeploy-1.3.3-py2.6.egg/paste/deploy/loadwsgi.py",
> line 413, in get_context
> section)
> File
> "/home/home/galaxy/software/galaxy-central/eggs/PasteDeploy-1.3.3-py2.6.egg/paste/deploy/loadwsgi.py",
> line 458, in _context_from_explicit
> value = import_string(found_expr)
> File
> "/home/home/galaxy/software/galaxy-central/eggs/PasteDeploy-1.3.3-py2.6.egg/paste/deploy/loadwsgi.py",
> line 18, in import_string
> return pkg_resources.EntryPoint.parse("x="+s).load(False)
> File "/home/home/galaxy/software/galaxy-central/lib/pkg_resources.py", line
> 1954, in load
> entry = __import__(self.module_name, globals(),globals(), ['__name__'])
> File
> "/home/home/galaxy/software/galaxy-central/lib/galaxy/web/buildapp.py", line
> 19, in <module>
> from galaxy import config, jobs, util, tools
> File
> "/home/home/galaxy/software/galaxy-central/lib/galaxy/jobs/__init__.py", line
> 4, in <module>
> from galaxy import util, model
> EOFError: EOF read where object expected
> Removing PID file paster.pid
>
> Would this suggest that the eggs are bad? What would be the best way to
> remedy the situation
Hi Michael,
I think your eggs are okay, the occurrence of "egg" in the traceback is simply
because the problem occurs beneath a call in the PasteDeploy egg. I think your
copy of the source may be corrupt. Could you verify that things are okay by
using 'hg status'? I'd also suggest finding and removing all .pyc files and
letting Python recreate them.
--nate
>
> Thanks
>
> Michael.
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