Still waiting on a reply! Any suggestion is appreciated.
On Tue, Feb 26, 2013 at 1:55 PM, Mahtab Mirmomeni < m.mirmom...@student.unimelb.edu.au> wrote: > Hi all, > > I have installed Deseq (by vipints) from the main galaxy toolshed and have > followed the make instructions but I'm still not unable to run it inside > Galaxy and I get the following error. > > (Path is the path to our local galaxy instance) > > error: get_read_counts: > Path/shed_tools/toolshed.g2.bx.psu.edu/repos/vipints/deseq_hts/2b3bb3348076/deseq_hts/deseq-hts_1.0/mex/get_reads.mex: > failed to load: > /mnt/all/cloudman/galaxy/clare/shed_tools/toolshed.g2.bx.psu.edu/repos/vipints/deseq_hts/2b3bb3348076/deseq_hts/deseq-hts_1.0/mex/get_reads.mex: > undefined symbol: bam_index_destroy > error: called from: > error: > Path/shed_tools/toolshed.g2.bx.psu.edu/repos/vipints/deseq_hts/2b3bb3348076/deseq_hts/deseq-hts_1.0/src/get_read_counts.m > at line 97, column 34 > starting Octave failed > > I should add that I can run octave from command line and it seems to be > working. > > Any suggestions is much appreciated. > > Thanks > > Mahtab > >
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