Hello Leon,
Are you still experiencing problems with your local install? Could you
confirm that you have attempted this again with the current distribution
(April 8th) and have completed the NGS Tool set up as described in our
wiki? Once we know everything is current it will be easier to offer more
help.
https://bitbucket.org/galaxy/galaxy-central/wiki/NGSLocalSetup
galaxy-dist% hg pull -u -r 50e249442c5a
https://bitbucket.org/galaxy/galaxy-central/wiki/Features/DevNewsBriefs
Best!
Jen
Galaxy team
On 3/19/11 10:30 AM, Leon Mei wrote:
Dear colleagues,
I have a local installed Galaxy. When I try to run bowtie to align a
small FASTQ file, I got the following message and the result was
empty.
"""
empty, format: sam, database: Project-Id-Version: PACKAGE VERSION
Report-Msgid-Bugs-To: POT-Creation-Date: 2008-09-21 18:33+0900
PO-Revision-Date: 2009-03-17 03:55-0400 Last-Translator: FULL NAME
Language-Team: en Plural-Forms: nplurals=2; plural=(n != 1)
MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8
Content-Transfer-Encoding: 8bit Generated-By: Babel 0.9.4
Info:
"""
It seems bowtie_wrapper.py wasn't executed at all. Has someone seen
this message before and what could be the cause?
Thanks,
Leon
--
Jennifer Jackson
http://usegalaxy.org
http://galaxyproject.org
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