Shashi,
All of Galaxy's datasets have the extension .dat so your problem is
not uncommon. The general solution to this is to create temp files
that have the the required extensions for the tool and point them to/
from the actual Galaxy input and output. There are several ways to do
this. If you have a wrapper script, you can do it there. See the BWA
wrapper for an example in a Python wrapper (tools/sr_mapping/
bwa_wrapper.py, especially lines 223-8). If you have only the XML
config file, you can do it there. For an example of this, see the
Freebayes tool (tools/human_genome_variation/freebayes.xml). This
links two input files to specifically named files.
Let us know if you have further questions.
Kelly
On Wed May 25, at 1:05 PM, shashi shekhar wrote:
Hi All,
I have some problem with extension of file.some executables file
will recognize the only the specific extension like autodock . it
takes one input file ( extension with .dpf ) and one outpt file
(extension with .dlg). how can we resolve such type of problem .
Regards
Shashi shekhar
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