Hi Luca,
Could you send your job_conf.xml please? Also, is there any chance that you
modified run.sh to set DRMAA_LIBRARY_PATH there (which would override what
you set on the command line)?
--nate
On Thu, Apr 3, 2014 at 9:17 AM, Luca Toldo lucato...@gmail.com wrote:
Dear All,
after having
Hi Luca,
Are you passing any params to the runner for inclusion as PBS submit
parameters (param id=nativeSpecification in job_conf.xml)?
--nate
On Wed, Apr 2, 2014 at 12:59 PM, Luca Toldo lucato...@gmail.com wrote:
Dear all, SUSE SLE 11 SP 1, with PBS Pro 12.1 client delivers
Thanks Björn. Luca, what version of pbs-drmaa are you using now?
On Wed, Apr 2, 2014 at 2:40 PM, Björn Grüning bjoern.gruen...@gmail.comwrote:
Hi Nate,
I tried to help Luca today, but I failed totally ...
He is not using param id=nativeSpecification at all. Or put it that
way if he isn't
Dear Nate, and Björn
thankyou for your help. As Björn said, indeed i get always the same error
message regardless if I use the id=nativeSpecification or not. How can one
figure out the version of pbs-drmaa that the system is using ? It would be
really useful to have a step-by-step tutorial on how
Hi Luca,
We generally have not provided detailed documentation on this portion since
it's not really within the scope of Galaxy itself, and documentation would
be likely to become out of date as these external libraries (like
pbs-drmaa) are updated, and cluster configurations are very
Thankyou Nate for your prompt and detailed support.
Unfortunately I am on a different time zone and I do not have access now to
the system.
Thankyou for the suggestion you provided me to do the debugging.
I will carry that out in about 12 hours from now and let you know.
Thankyou again
Luca
p.s.
Hi Nate,
I tried to help Luca today, but I failed totally ...
He is not using param id=nativeSpecification at all. Or put it that
way if he isn't using it, he gets the same error.
Cheers,
Bjoern
Am 02.04.2014 20:34, schrieb Nate Coraor:
Hi Luca,
Are you passing any params to the runner for
