Hi Lifeng,
Another option would be the 'from_work_dir' option to the data tag. Have
a look at the tophat repository in the Tool Shed for an example:
http://toolshed.g2.bx.psu.edu/view/devteam/tophat
--nate
On Tue, Mar 25, 2014 at 11:29 AM, Hans-Rudolf Hotz
hansrudolf.h...@fmi.chwrote:
Hi Lifeng
The easiest way to execute your script will be to provide a wrapper script
(written in your preferred language, eg Python, perl, etc). Call the wrapper
script like this:
commandwrapper $input $output1 $output2/command
and define $output1 $output2 according to your needs:
Hi Lifeng
I am glad to hear it works
WRT your thoughts about using a wrapper script for each tool: I agree it might
help you to standardize your tools, however it also introduces an extra step,
which needs to be taken care of if you want to change/upgrade your tool.
Personally, I would only
works like a charm. Thank you!
I start to wonder if i should use this wrapper approach on all scripts
regardless of the original input-output format for standardized
integration, and possible automated integrations in the future.
On Tue, Mar 25, 2014 at 6:53 AM, Hans-Rudolf Hotz
