Re: [galaxy-dev] Request for pulling the updated FASTQ (de-)interlacer tool

2011-08-05 Thread Florent Angly 

Yes, it is all fine and dandy! Thanks Jen and Kanwei,
Florent

On 06/08/11 06:39, Jennifer Jackson wrote:

Great, thanks Kanwei! The bitbucket issue is now set to resolved.
Jen

On 8/5/11 1:29 PM, Kanwei Li wrote:

The tool was committed in June :)

-K

On Fri, Aug 5, 2011 at 4:13 PM, Jennifer Jackson mailto:j...@bx.psu.edu>> wrote:

Hello Florent,

I created a ticket to better track this request. I do not find that
the changes were added yet (or that any decision about them was
made), but if so and I just missed it, we can update/close the
bitbucket ticket.
https://bitbucket.org/galaxy/__galaxy-central/issue/636


Thanks for contributing to Galaxy!

Jen
Galaxy team


On 5/17/11 12:47 AM, Florent Angly wrote:

Dear Galaxy team,
Please consider pulling these changes I made to the
interlacer/de-interlacer tools into the main Galaxy repository:

https://bitbucket.org/fangly/__galaxy-central/changeset/__7f7ec8f05d36


While the tools were handling mate pairs fine, I now added the
ability
to also keep single reads (reads that miss their mate) in a 
separate

file. The functional tests were updated and pass.
Thanks,
Florent

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Jennifer Jackson
http://usegalaxy.org
http://galaxyproject.org/__Support 



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Re: [galaxy-dev] Request for pulling the updated FASTQ (de-)interlacer tool

2011-08-05 Thread Jennifer Jackson 

Great, thanks Kanwei! The bitbucket issue is now set to resolved.
Jen

On 8/5/11 1:29 PM, Kanwei Li wrote:

The tool was committed in June :)

-K

On Fri, Aug 5, 2011 at 4:13 PM, Jennifer Jackson mailto:j...@bx.psu.edu>> wrote:

Hello Florent,

I created a ticket to better track this request. I do not find that
the changes were added yet (or that any decision about them was
made), but if so and I just missed it, we can update/close the
bitbucket ticket.
https://bitbucket.org/galaxy/__galaxy-central/issue/636


Thanks for contributing to Galaxy!

Jen
Galaxy team


On 5/17/11 12:47 AM, Florent Angly wrote:

Dear Galaxy team,
Please consider pulling these changes I made to the
interlacer/de-interlacer tools into the main Galaxy repository:
https://bitbucket.org/fangly/__galaxy-central/changeset/__7f7ec8f05d36

While the tools were handling mate pairs fine, I now added the
ability
to also keep single reads (reads that miss their mate) in a separate
file. The functional tests were updated and pass.
Thanks,
Florent

_
Please keep all replies on the list by using "reply all"
in your mail client. To manage your subscriptions to this
and other Galaxy lists, please use the interface at:

http://lists.bx.psu.edu/


--
Jennifer Jackson
http://usegalaxy.org
http://galaxyproject.org/__Support 

_
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--
Jennifer Jackson
http://usegalaxy.org
http://galaxyproject.org/Support
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Re: [galaxy-dev] Request for pulling the updated FASTQ (de-)interlacer tool

2011-08-05 Thread Kanwei Li 
The tool was committed in June :)

-K

On Fri, Aug 5, 2011 at 4:13 PM, Jennifer Jackson  wrote:

> Hello Florent,
>
> I created a ticket to better track this request. I do not find that the
> changes were added yet (or that any decision about them was made), but if so
> and I just missed it, we can update/close the bitbucket ticket.
> https://bitbucket.org/galaxy/**galaxy-central/issue/636
>
> Thanks for contributing to Galaxy!
>
> Jen
> Galaxy team
>
>
> On 5/17/11 12:47 AM, Florent Angly wrote:
>
>> Dear Galaxy team,
>> Please consider pulling these changes I made to the
>> interlacer/de-interlacer tools into the main Galaxy repository:
>> https://bitbucket.org/fangly/**galaxy-central/changeset/**7f7ec8f05d36
>> While the tools were handling mate pairs fine, I now added the ability
>> to also keep single reads (reads that miss their mate) in a separate
>> file. The functional tests were updated and pass.
>> Thanks,
>> Florent
>>
>> __**_
>> Please keep all replies on the list by using "reply all"
>> in your mail client. To manage your subscriptions to this
>> and other Galaxy lists, please use the interface at:
>>
>> http://lists.bx.psu.edu/
>>
>
> --
> Jennifer Jackson
> http://usegalaxy.org
> http://galaxyproject.org/**Support 
>
> __**_
> Please keep all replies on the list by using "reply all"
> in your mail client.  To manage your subscriptions to this
> and other Galaxy lists, please use the interface at:
>
>  http://lists.bx.psu.edu/
>
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Re: [galaxy-dev] Request for pulling the updated FASTQ (de-)interlacer tool

2011-08-05 Thread Jennifer Jackson 

Hello Florent,

I created a ticket to better track this request. I do not find that the 
changes were added yet (or that any decision about them was made), but 
if so and I just missed it, we can update/close the bitbucket ticket.

https://bitbucket.org/galaxy/galaxy-central/issue/636

Thanks for contributing to Galaxy!

Jen
Galaxy team

On 5/17/11 12:47 AM, Florent Angly wrote:

Dear Galaxy team,
Please consider pulling these changes I made to the
interlacer/de-interlacer tools into the main Galaxy repository:
https://bitbucket.org/fangly/galaxy-central/changeset/7f7ec8f05d36
While the tools were handling mate pairs fine, I now added the ability
to also keep single reads (reads that miss their mate) in a separate
file. The functional tests were updated and pass.
Thanks,
Florent

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--
Jennifer Jackson
http://usegalaxy.org
http://galaxyproject.org/Support
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