Hi Patrick,
I think this is worth consideringand will run by team. Genomes are a bit
on hold right now due to the move of the public server, but once that
resumes, I have a ticket going with public requests in it. Would you
please send me the details for this organism: exact accession(s),
special build names/links, and such. You can send to me direct.
This is the ticket I'll be adding the info to, please don't add
yourself, this is just so you can follow:
https://trello.com/c/kzVklAIE
(There is much more data in pipe, including genomes, tracked elsewhere).
Meanwhile, you don't need to wait (or want to!), to use the genome right
now, do this as a _custom reference genome_ with tools. All you need is
a fasta copy of the genome in your history. Pay attention to the
"chromosome" identifiers and any identifiers in related GTF/BED files
you intend to incorporate into your analysis - these almost without
exception have to be /exactly the same /to function in downstream tool.
Here's the how-to:
http://wiki.galaxyproject.org/Support#Custom_reference_genome
http://vimeo.com/galaxyproject/customgenome
Note that the FTP server is now: "usegalaxy.org" instead of any server
mentioned in the films, as noted on the "Upload Data" tool form.
Thanks,
Jen
Galaxy team
On 10/11/13 5:40 AM, patrick.j...@unil.ch wrote:
Hello,
I'm working in the university of Lausanne. We are currently working
with fire ants, Solenopsis invicta.
I was wondering if that would possible to upload Solenopsis invicta's
genome on the Galaxy platform, which could be very useful to us and
certainly to other people.
Thank you !
Patrick Joye
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Jennifer Hillman-Jackson
http://galaxyproject.org
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