Re: [galaxy-dev] Strange issue with datatypes in Galaxy version of last week

2014-11-19 Thread Lukasse, Pieter
Hi,

This issue is appearing again, after the upgrade of our Galaxy on October the 
23rdanyone experiencing the same?

Thanks,

Pieter.

From: galaxy-dev-boun...@lists.bx.psu.edu 
[mailto:galaxy-dev-boun...@lists.bx.psu.edu] On Behalf Of Lukasse, Pieter
Sent: vrijdag 4 april 2014 10:59
To: Bossers, Alex; Kuijt, Eric
Cc: galaxy-dev@lists.bx.psu.edu
Subject: Re: [galaxy-dev] Strange issue with datatypes in Galaxy version of 
last week

Hi Alex, all

FYI - I've added the card to https://trello.com/c/ro8knsaa  some time ago. Can 
you please vote for it?

Thanks,

Pieter.

From: Bossers, Alex
Sent: dinsdag 25 maart 2014 16:52
To: Lukasse, Pieter
Cc: galaxy-dev@lists.bx.psu.edumailto:galaxy-dev@lists.bx.psu.edu
Subject: RE: [galaxy-dev] Strange issue with datatypes in Galaxy version of 
last week

Pieter,
I just experienced the same with another generic tabular .tab file output. It 
broke the filename at dash without any extension.
The file itself was ok, just the name.
Alex


Van: 
galaxy-dev-boun...@lists.bx.psu.edumailto:galaxy-dev-boun...@lists.bx.psu.edu 
[mailto:galaxy-dev-boun...@lists.bx.psu.edu] Namens Lukasse, Pieter
Verzonden: dinsdag 25 maart 2014 16:33
Aan: galaxy-dev@lists.bx.psu.edumailto:galaxy-dev@lists.bx.psu.edu
Onderwerp: [galaxy-dev] Strange issue with datatypes in Galaxy version of last 
week

Hi,

Apparently a new datatypes bug has been introduced in the Galaxy version of 
last week:

I have a tool that generates a csv file. Tool configuration is like this:
outputs
  data name=simOut format=msclust.csv label=${tool.name} on ${on_string} 
- SIM file/

The datatypes has this entry:
datatype extension=msclust.csv type=galaxy.datatypes.tabular:Tabular 
mimetype=text/csv display_in_upload=true subclass=true/

At first Galaxy output seems fine:
[cid:image001.png@01D003FF.9BD73320]

But when I download the file, the downloaded file name will be : 
Galaxy40-[MsClust_on_data_1_-_SIM_file]-

When I go to edit attributes and just click save, then upon downloading 
again, the file name is correct... 
Galaxy40-[MsClust_on_data_1_-_SIM_file].msclust.csv  .

Anyone faced this issue?

Thanks and regards,

Pieter.

Pieter Lukasse
Wageningen UR, Plant Research International
Departments of Bioscience and Bioinformatics
Wageningen Campus, Building 107, Droevendaalsesteeg 1, 6708 PB,
Wageningen, the Netherlands
+31-317481122; skype: pieter.lukasse.wur
http://www.pri.wur.nlhttp://www.pri.wur.nl/

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Re: [galaxy-dev] Strange issue with datatypes in Galaxy version of last week

2014-11-19 Thread John Chilton
I have created a ticket for this issue here (https://trello.com/c/jxqT0ndZ).

When the file is in the incorrect state (extension missing from the
download) - if you close out your browser tab and reopen it in a new window
and try to download the file does it still exhibit the problem (indicating
a client-side problem instead of a server metadata/datatype issue)?

-John

On Wed, Nov 19, 2014 at 7:49 AM, Lukasse, Pieter pieter.luka...@wur.nl
wrote:

  Hi,



 This issue is appearing again, after the upgrade of our Galaxy on *October
 the 23rd*anyone experiencing the same?



 Thanks,



 Pieter.



 *From:* galaxy-dev-boun...@lists.bx.psu.edu [mailto:
 galaxy-dev-boun...@lists.bx.psu.edu] *On Behalf Of *Lukasse, Pieter
 *Sent:* vrijdag 4 april 2014 10:59
 *To:* Bossers, Alex; Kuijt, Eric
 *Cc:* galaxy-dev@lists.bx.psu.edu
 *Subject:* Re: [galaxy-dev] Strange issue with datatypes in Galaxy
 version of last week



 Hi Alex, all



 FYI – I’ve added the card to https://trello.com/c/ro8knsaa  some time
 ago. Can you please vote for it?



 Thanks,



 Pieter.



 *From:* Bossers, Alex
 *Sent:* dinsdag 25 maart 2014 16:52
 *To:* Lukasse, Pieter
 *Cc:* galaxy-dev@lists.bx.psu.edu
 *Subject:* RE: [galaxy-dev] Strange issue with datatypes in Galaxy
 version of last week



 Pieter,

 I just experienced the same with another generic tabular .tab file output.
 It broke the filename at dash without any extension.

 The file itself was ok, just the name.

 Alex





 *Van:* galaxy-dev-boun...@lists.bx.psu.edu [
 mailto:galaxy-dev-boun...@lists.bx.psu.edu
 galaxy-dev-boun...@lists.bx.psu.edu] *Namens *Lukasse, Pieter
 *Verzonden:* dinsdag 25 maart 2014 16:33
 *Aan:* galaxy-dev@lists.bx.psu.edu
 *Onderwerp:* [galaxy-dev] Strange issue with datatypes in Galaxy version
 of last week



 Hi,



 Apparently a new datatypes bug has been introduced in the Galaxy version
 of last week:



 I have a tool that generates a csv file. Tool configuration is like this:

 outputs

   data name=*simOut* format=*msclust.csv* label=*${tool.name
 http://tool.name} on ${on_string} - SIM file*/



 The datatypes has this entry:

 datatype extension=*msclust.csv* type=
 *galaxy.datatypes.tabular:Tabular* mimetype=*text/csv*
 display_in_upload=*true* subclass=*true/*



 At first Galaxy output seems fine:



 But when I download the file, the downloaded file name will be :
 Galaxy40-[MsClust_on_data_1_-_SIM_file]-



 When I go to “edit attributes” and just click “save”, then upon
 downloading again, the file name is correct...
 Galaxy40-[MsClust_on_data_1_-_SIM_file].msclust.csv  .



 Anyone faced this issue?



 Thanks and regards,



 Pieter.



 Pieter Lukasse

 Wageningen UR, Plant Research International

 Departments of Bioscience and Bioinformatics

 Wageningen Campus, Building 107, Droevendaalsesteeg 1, 6708 PB,
 Wageningen, the Netherlands

 +31-317481122; skype: pieter.lukasse.wur

 http://www.pri.wur.nl



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Re: [galaxy-dev] Strange issue with datatypes in Galaxy version of last week

2014-04-04 Thread Lukasse, Pieter
Hi Alex, all

FYI - I've added the card to https://trello.com/c/ro8knsaa  some time ago. Can 
you please vote for it?

Thanks,

Pieter.

From: Bossers, Alex
Sent: dinsdag 25 maart 2014 16:52
To: Lukasse, Pieter
Cc: galaxy-dev@lists.bx.psu.edu
Subject: RE: [galaxy-dev] Strange issue with datatypes in Galaxy version of 
last week

Pieter,
I just experienced the same with another generic tabular .tab file output. It 
broke the filename at dash without any extension.
The file itself was ok, just the name.
Alex


Van: 
galaxy-dev-boun...@lists.bx.psu.edumailto:galaxy-dev-boun...@lists.bx.psu.edu 
[mailto:galaxy-dev-boun...@lists.bx.psu.edu] Namens Lukasse, Pieter
Verzonden: dinsdag 25 maart 2014 16:33
Aan: galaxy-dev@lists.bx.psu.edumailto:galaxy-dev@lists.bx.psu.edu
Onderwerp: [galaxy-dev] Strange issue with datatypes in Galaxy version of last 
week

Hi,

Apparently a new datatypes bug has been introduced in the Galaxy version of 
last week:

I have a tool that generates a csv file. Tool configuration is like this:
outputs
  data name=simOut format=msclust.csv label=${tool.name} on ${on_string} 
- SIM file/

The datatypes has this entry:
datatype extension=msclust.csv type=galaxy.datatypes.tabular:Tabular 
mimetype=text/csv display_in_upload=true subclass=true/

At first Galaxy output seems fine:
[cid:image001.png@01CF4FF4.E1830B70]

But when I download the file, the downloaded file name will be : 
Galaxy40-[MsClust_on_data_1_-_SIM_file]-

When I go to edit attributes and just click save, then upon downloading 
again, the file name is correct... 
Galaxy40-[MsClust_on_data_1_-_SIM_file].msclust.csv  .

Anyone faced this issue?

Thanks and regards,

Pieter.

Pieter Lukasse
Wageningen UR, Plant Research International
Departments of Bioscience and Bioinformatics
Wageningen Campus, Building 107, Droevendaalsesteeg 1, 6708 PB,
Wageningen, the Netherlands
+31-317481122; skype: pieter.lukasse.wur
http://www.pri.wur.nlhttp://www.pri.wur.nl/

inline: image001.png___
Please keep all replies on the list by using reply all
in your mail client.  To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
  http://lists.bx.psu.edu/

To search Galaxy mailing lists use the unified search at:
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Re: [galaxy-dev] Strange issue with datatypes in Galaxy version of last week

2014-03-25 Thread Bossers, Alex
Pieter,
I just experienced the same with another generic tabular .tab file output. It 
broke the filename at dash without any extension.
The file itself was ok, just the name.
Alex


Van: galaxy-dev-boun...@lists.bx.psu.edu 
[mailto:galaxy-dev-boun...@lists.bx.psu.edu] Namens Lukasse, Pieter
Verzonden: dinsdag 25 maart 2014 16:33
Aan: galaxy-dev@lists.bx.psu.edu
Onderwerp: [galaxy-dev] Strange issue with datatypes in Galaxy version of last 
week

Hi,

Apparently a new datatypes bug has been introduced in the Galaxy version of 
last week:

I have a tool that generates a csv file. Tool configuration is like this:
outputs
  data name=simOut format=msclust.csv label=${tool.name} on ${on_string} 
- SIM file/

The datatypes has this entry:
datatype extension=msclust.csv type=galaxy.datatypes.tabular:Tabular 
mimetype=text/csv display_in_upload=true subclass=true/

At first Galaxy output seems fine:
[cid:image001.png@01CF484A.88C64A30]

But when I download the file, the downloaded file name will be : 
Galaxy40-[MsClust_on_data_1_-_SIM_file]-

When I go to edit attributes and just click save, then upon downloading 
again, the file name is correct... 
Galaxy40-[MsClust_on_data_1_-_SIM_file].msclust.csv  .

Anyone faced this issue?

Thanks and regards,

Pieter.

Pieter Lukasse
Wageningen UR, Plant Research International
Departments of Bioscience and Bioinformatics
Wageningen Campus, Building 107, Droevendaalsesteeg 1, 6708 PB,
Wageningen, the Netherlands
+31-317481122; skype: pieter.lukasse.wur
http://www.pri.wur.nlhttp://www.pri.wur.nl/

inline: image001.png___
Please keep all replies on the list by using reply all
in your mail client.  To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
  http://lists.bx.psu.edu/

To search Galaxy mailing lists use the unified search at:
  http://galaxyproject.org/search/mailinglists/