After some investigating I think the problem is at the line:
converted_dataset = converter.execute( trans, incoming=params,
set_output_hid=visible, set_output_history=set_output_history)[1]
in File
/panfs/pstor.storage/home/qbcglab/galaxy_run/galaxy-dist/lib/galaxy/datatypes/data.py,
line
Here is the first part of the error (Traceback):
galaxy.tools ERROR 2013-08-01 22:56:16,590 Exception caught while
attempting tool execution:
Traceback (most recent call last):
File
/panfs/pstor.storage/home/qbcglab/galaxy_run/galaxy-dist/lib/galaxy/tools/__init__.py,
line 1936, in
