: Tuesday, September 06, 2011 7:21 AM
To: Chorny, Ilya
Cc: Assaf Gordon; Shantanu Pavgi; galaxydev psu
Subject: Re: [galaxy-dev] TEMP variable in cluster install
Chorny, Ilya wrote:
Nate,
We ran into this issue with /tmp not having enough space. We came up with a
generic solution and were
...@lists.bx.psu.edu
[mailto:galaxy-dev-boun...@lists.bx.psu.edu] On Behalf Of Assaf Gordon
Sent: Thursday, August 04, 2011 2:31 PM
To: Shantanu Pavgi; galaxydev psu
Subject: Re: [galaxy-dev] TEMP variable in cluster install
As a follow-up for SGE + TMP variables,
I've also encountered problems
As a follow-up for SGE + TMP variables,
I've also encountered problems with settings TEMP,TMP and TMPDIR variables.
Tried setting ~/.sge_request and changing the Galaxy environment variables
before starting python - nothing worked -
TMPDIR and TMP were always set to /tmp/all.q.X by SGE .
On Jul 21, 2011, at 6:24 PM, Shantanu Pavgi wrote:
We have configured galaxy to work with our SGE cluster using drmaa job runner
interface. We are using 'unified method' for this install and
both TEMP environment variable and new_file_path in universe_wsgi.ini file
have been configured
