Re: [galaxy-dev] These tool dependencies are considered orphans

2013-03-19 Thread Peter Cock
On Tue, Mar 19, 2013 at 1:43 PM, Greg Von Kuster wrote: > Hi Peter, > > Please feel free to edit the ToolConfigSyntax page if you get a chance. > Unfortunately I have my hands full with just the tool shed wiki, and it is > not possible for me to get time to keep the extensive Galaxy > documentatio

Re: [galaxy-dev] These tool dependencies are considered orphans

2013-03-19 Thread Greg Von Kuster
Hi Peter, Please feel free to edit the ToolConfigSyntax page if you get a chance. Unfortunately I have my hands full with just the tool shed wiki, and it is not possible for me to get time to keep the extensive Galaxy documentation current. Any help is much appreciated! Greg Von Kuster On

Re: [galaxy-dev] These tool dependencies are considered orphans

2013-03-19 Thread Peter Cock
On Tue, Mar 19, 2013 at 1:15 PM, Greg Von Kuster wrote: > Hi Peter, > > You are correct. A tool dependency definition is associated with a tool via > the tool config's tag set. The combination of name, version > and type is used to associated a tool with a tool dependency. In this case, > the

Re: [galaxy-dev] These tool dependencies are considered orphans

2013-03-19 Thread Greg Von Kuster
Hi Peter, On Mar 19, 2013, at 7:44 AM, Peter Cock wrote: > Hi all, > > I noticed today that there is a new yellow warning on the NCBI > BLAST+ repository in the main Galaxy Tool Shed, > http://toolshed.g2.bx.psu.edu/view/devteam/ncbi_blast_plus > > Quote: >> The settings for name, version and t