Thanks for your response. I figured out it was some extra text at the end of the xml file that was preventing galaxy from reading the file.
I also was confused about how to setup the proxy. For Ubuntu, the apache2 configuration file is in /etc/apache2/sites-available/default (using virtual servers by default) I was initially working with /etc/apache2/httpd.conf which I think may be the standard in other distros. Jeremy On Thu, Nov 3, 2011 at 7:23 PM, Jennifer Jackson <j...@bx.psu.edu> wrote: > Hello Jeremy, > > Galaxy does not come with a display tool for UCSC. There is an integrated > display tool, under Visualization, commonly called "Trackster". The icon > for Trackster is a set of colored, stacked bars that when hovered over is > labeled "Visualize in Trackster". > > If you do want to display at the public (or a local mirror) UCSC browser, > then some additional set-up is required. Here are the links to the details, > including a tutorial: > > http://wiki.g2.bx.psu.edu/**Admin/Config/Apache%20Proxy<http://wiki.g2.bx.psu.edu/Admin/Config/Apache%20Proxy>(scroll > to Display at UCSC) > > http://wiki.g2.bx.psu.edu/**Admin/Tools/External%** > 20Display%20Applications%**20Tutorial<http://wiki.g2.bx.psu.edu/Admin/Tools/External%20Display%20Applications%20Tutorial> > > http://wiki.g2.bx.psu.edu/**Admin <http://wiki.g2.bx.psu.edu/Admin> > > Hopefully this helps to get you started, > > Jen > Galaxy team > > > On 11/2/11 3:52 PM, Jeremy Villalobos wrote: > >> Hello: >> >> The display tool for UCSC that comes with the local installation package >> does not work. uploading a bigbed file (from the test-data that comes >> with the package) does not trigger the webapp to show an option to view >> the file using UCSC's viewer. >> >> How do I enable this ? >> >> To reproduce the issue, simply download galaxy using mercurial. change >> the host address to 0.0.0.0. and load the bigbed file from the >> test-data directory. >> Once the file uploads, the user should expect to see a display tool >> added to the files description (on the right), but nothing is shown. >> >> Thanks >> >> Jeremy >> UNCC >> >> >> ______________________________**_____________________________ >> Please keep all replies on the list by using "reply all" >> in your mail client. To manage your subscriptions to this >> and other Galaxy lists, please use the interface at: >> >> http://lists.bx.psu.edu/ >> > > -- > Jennifer Jackson > http://usegalaxy.org > http://galaxyproject.org/wiki/**Support<http://galaxyproject.org/wiki/Support> >
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