Re: [galaxy-dev] WARNING:galaxy.datatypes.registry:Overriding conflicting datatype

2014-02-14 Thread Greg Von Kuster
I've gone ahead and made the change in the datatypes registry to use log.debu instead of log.warning, so hopefully this issue is resolved. The changeset in central is 12497:0b0018fa5d20, which has also be grafted to stable. Greg Von Kuster On Feb 13, 2014, at 11:51 AM, Jim Johnson wrote: > O

Re: [galaxy-dev] WARNING:galaxy.datatypes.registry:Overriding conflicting datatype

2014-02-13 Thread Jim Johnson
On 2/13/14, 10:22 AM, Greg Von Kuster wrote: Hi JJ, On Feb 13, 2014, at 11:00 AM, Jim Johnson wrote: I now have 2 versions of snpeff installed from the toolshed on my galaxy server. Each snpeff version includes an identical datatypes_conf.xml The galaxy server is setting metadata externally.

Re: [galaxy-dev] WARNING:galaxy.datatypes.registry:Overriding conflicting datatype

2014-02-13 Thread Greg Von Kuster
Hi JJ, On Feb 13, 2014, at 11:00 AM, Jim Johnson wrote: > I now have 2 versions of snpeff installed from the toolshed on my galaxy > server. > Each snpeff version includes an identical datatypes_conf.xml > The galaxy server is setting metadata externally. > > When any job runs, (in may