Re: [galaxy-dev] WARNING:galaxy.eggs:Warning: MarkupSafe (a dependent egg of Mako) cannot be fetched

2013-01-23 Thread Luobin Yang
It turned out this error was caused by the python installation on the computer node, I reinstalled Python 2.7.3 on the computer node and then fetch_eggs.py doesn't generate any problem, however when I submit a job in Galaxy and the job fails with the following error: Traceback (most recent call la

Re: [galaxy-dev] WARNING:galaxy.eggs:Warning: MarkupSafe (a dependent egg of Mako) cannot be fetched

2013-01-23 Thread Luobin Yang
Hi, Nate, It seems fetch_eggs.py does not run correctly on the compute node, which runs Ubuntu 12.04.1 LTS and Python 2.7.3. After I ran "python scripts/fetch_eggs.py", I got the following errors: Traceback (most recent call last): File "scripts/fetch_eggs.py", line 30, in c.resolve() # On

Re: [galaxy-dev] WARNING:galaxy.eggs:Warning: MarkupSafe (a dependent egg of Mako) cannot be fetched

2013-01-23 Thread Nate Coraor
On Jan 23, 2013, at 4:09 PM, Luobin Yang wrote: > Hi, > > I ran into this error and I found the following thread discussing the > problem, interestingly, for my system, the computer node runs the same Python > version as the head node, but with a newer OS version, but it also generates > this