Samuel,
Look at the parse(0 method in the Tool class in ~/lib/galaxy/tools/__init__.py
for most of it. You should be able to find everything you need from there.
Greg Von Kuster
On Jul 22, 2011, at 9:41 AM, Samuel Lampa wrote:
Quick question to you devs,
I need to find the code where the
Ah, thanks! I somehow missed that file altogether ...
// Samuel
On 07/22/2011 03:59 PM, Greg Von Kuster wrote:
Samuel,
Look at the parse(0 method in the Tool class in ~/lib/galaxy/tools/__init__.py
for most of it. You should be able to find everything you need from there.
Greg Von Kuster
One follow up question then:
The #if#else syntax, in for example this tool example:
...
command interpreter=python
sam_to_bam.py
--input1=$source.input1
--dbkey=${input1.metadata.dbkey}
#if $source.index_source == history:
--ref_file=$source.ref_file
On Fri, Jul 22, 2011 at 3:50 PM, Samuel Lampa
samuel.la...@scilifelab.uu.se wrote:
One follow up question then:
The #if#else syntax, in for example this tool example:
...
... is that something that you galaxy parses itself (tried to grep for some
matching-code, but found nothing so far),
