To: 'Jeremy Goecks'
Cc: 'Galaxy-dev Galaxy-dev'
Subject: Re: [galaxy-dev] Why does my trackster complain about not being
able to display BED files?
I tracked it down to a problem with the API proxy configuration.
I had the API calls diverted to a different server since I wanted to ensure
that API
: galaxy-dev-boun...@lists.bx.psu.edu
[mailto:galaxy-dev-boun...@lists.bx.psu.edu] On Behalf Of Thon de Boer
Sent: Friday, August 23, 2013 5:47 PM
To: 'Jeremy Goecks'
Cc: 'Galaxy-dev Galaxy-dev'
Subject: Re: [galaxy-dev] Why does my trackster complain about not being able
to display BED files
, August 23, 2013 11:02 AM
To: 'Jeremy Goecks'
Cc: 'Galaxy-dev Galaxy-dev'
Subject: Re: [galaxy-dev] Why does my trackster complain about not being
able to display BED files?
Thanks Jeremy,
I did what you suggested and now it no longer complains!
Not sure if I had edited datatypes_conf.xml
-boun...@lists.bx.psu.edu] On Behalf Of Thon de Boer
Sent: Friday, August 23, 2013 5:12 PM
To: 'Jeremy Goecks'
Cc: 'Galaxy-dev Galaxy-dev'
Subject: Re: [galaxy-dev] Why does my trackster complain about not being
able to display BED files?
I now have a different problem with a different
...@lists.bx.psu.edu] On Behalf Of Thon de Boer
Sent: Friday, August 23, 2013 5:47 PM
To: 'Jeremy Goecks'
Cc: 'Galaxy-dev Galaxy-dev'
Subject: Re: [galaxy-dev] Why does my trackster complain about not being
able to display BED files?
I tracked it down to a problem with the API proxy configuration
Hi Thon
double check your datatypes_conf.xml (which was not touched/changed
during the update process, since it is listed in the .hgignore file, I
guess) with the new datatypes_conf.xml.sample file for any changes
regarding converters for bed files
Regards, Hans-Rudolf
On 08/22/2013
Hi Anthonius,
Do you have the BEDTools installed and its directory added to your PATH
environment variable? Trackster uses compressed file formats to reduce the
amount of data transfers.
I hope this helps,
Sam
On Wed, Aug 21, 2013 at 4:11 PM, Anthonius deBoer thondeb...@me.com wrote:
Hi,
Yep...$ bedtools --versionbedtools v2.17.0ThonOn Aug 21, 2013, at 01:40 PM, sam guerler aysam.guer...@gmail.com wrote:Hi Anthonius,Do you have the BEDTools installed and its directory added to your PATH environment variable? Trackster uses compressed file formats to reduce the amount of data
