John, I took a look at this and it's definitely a defect, not something you're 
missing.  Thanks for the report, I can let you know when a fix is available.

-Dannon

On Jul 28, 2011, at 2:30 PM, John Chilton wrote:

> Hello Galaxy Developers,
> 
>    I have a user who noticed a potential bug when extracting workflows from 
> histories on our local Galaxy server. I have recreated the bug on the public 
> Galaxy server with a much smaller history. The history can be found here: 
> http://main.g2.bx.psu.edu/u/jmchilton/h/column-join-workflow-bug
> 
>    Basically when creating workflows from such histories, the second input to 
> "Column Join" never seems to be connected to the previous step the way I 
> would expect it to be. In the workflow editor you can manually create this 
> connection, but it is easy to miss this in a large worfklow and have 
> incomplete results as a consequence. Am I missing something or is this a bug?
> 
> Thanks for your time,
> -John
> <workflow_from_history.png>___________________________________________________________
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