Thanks, that makes sense.
Ilya
-Original Message-
From: Ross [mailto:ross.laza...@gmail.com]
Sent: Thursday, July 28, 2011 10:14 PM
To: Chorny, Ilya
Cc: galaxy-dev@lists.bx.psu.edu
Subject: Re: [galaxy-dev] dataset_*_file directory being compied to file_path
when running fastqc
It's a feature although arguably necessitated by what some might consider a
design bug in FastQC
FastQC insists on writing the html report with links to the generated images
which it writes to a subdirectory. That won't work for Galaxy's html datatype,
so the wrapper script unpacks that structure into a Galaxy html datatype and
adjusts the links in the html so they work correctly when viewed in a history.
On Fri, Jul 29, 2011 at 2:47 PM, Chorny, Ilya icho...@illumina.com wrote:
I am testing the latest galaxy central distribution by running FASTQC.
It creates a directory call dataset_*_file in the
job_working_directory and then copies that directory to file_path when
the job is complete. Is that on purpose or is that a bug?
Thanks,
Ilya
Ilya Chorny Ph.D.
Bioinformatics - Intern
icho...@illumina.com
858-202-4582
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--
Ross Lazarus MBBS MPH;
Associate Professor, Harvard Medical School; Director of Bioinformatics,
Channing Lab; Tel: +1 617 505 4850; Head, Medical Bioinformatics, BakerIDI;
Tel: +61 385321444;
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