Re: [galaxy-dev] galaxy-dev Digest, Vol 96, Issue 14

2014-06-13 Thread Dannon Baker
This is a new one for me.  What configuration are you using for both your
'database_connection', and the 'amqp_internal_connection' in your
universe_wsgi.ini?


On Fri, Jun 13, 2014 at 12:29 AM, xlwang  wrote:

> Hello,
> when i run my galaxy instance type:
> $ sh run.sh
> I get some error like this:
> Traceback (most recent call last):
>   File "/export/galaxy-dist/lib/galaxy/webapps/galaxy/buildapp.py", line
> 38, in app_factory
> from galaxy.app import UniverseApplication
>   File "/export/galaxy-dist/lib/galaxy/app.py", line 21, in 
> from galaxy.queue_worker import GalaxyQueueWorker
>   File "/export/galaxy-dist/lib/galaxy/queue_worker.py", line 10, in
> 
> import galaxy.queues
>   File "/export/galaxy-dist/lib/galaxy/queues.py", line 17, in 
> from kombu import Exchange, Queue
>   File
> "/export/galaxy-dist/eggs/kombu-3.0.13-py2.7.egg/kombu/__init__.py", line
> 67, in __getattr__
> module = __import__(object_origins[name], None, None, [name])
>   File "/export/galaxy-dist/eggs/kombu-3.0.13-py2.7.egg/kombu/entity.py",
> line 10, in 
> from .abstract import MaybeChannelBound
>   File
> "/export/galaxy-dist/eggs/kombu-3.0.13-py2.7.egg/kombu/abstract.py", line
> 12, in 
> from .connection import maybe_channel
>   File
> "/export/galaxy-dist/eggs/kombu-3.0.13-py2.7.egg/kombu/connection.py", line
> 24, in 
> from kombu import exceptions
>   File
> "/export/galaxy-dist/eggs/kombu-3.0.13-py2.7.egg/kombu/exceptions.py", line
> 12, in 
> from amqp import ChannelError, ConnectionError, ResourceError
>   File "/export/galaxy-dist/eggs/amqp-1.4.5-py2.7.egg/amqp/__init__.py",
> line 32, in 
> from .basic_message import Message  # noqa
>   File
> "/export/galaxy-dist/eggs/amqp-1.4.5-py2.7.egg/amqp/basic_message.py", line
> 19, in 
> from .serialization import GenericContent
>   File
> "/export/galaxy-dist/eggs/amqp-1.4.5-py2.7.egg/amqp/serialization.py", line
> 33, in 
> from .five import int_types, long_t, string, string_t, items
>   File "/export/galaxy-dist/eggs/amqp-1.4.5-py2.7.egg/amqp/five.py", line
> 171, in 
> librt = ctypes.CDLL('librt.so.1', use_errno=True)
> TypeError: __init__() got an unexpected keyword argument 'use_errno'
>
> I have no idea why this happend. How can I fix it?
>
>
>
> ___
> Please keep all replies on the list by using "reply all"
> in your mail client.  To manage your subscriptions to this
> and other Galaxy lists, please use the interface at:
>   http://lists.bx.psu.edu/
>
> To search Galaxy mailing lists use the unified search at:
>   http://galaxyproject.org/search/mailinglists/
>
___
Please keep all replies on the list by using "reply all"
in your mail client.  To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
  http://lists.bx.psu.edu/

To search Galaxy mailing lists use the unified search at:
  http://galaxyproject.org/search/mailinglists/

Re: [galaxy-dev] galaxy-dev Digest, Vol 96, Issue 14

2014-06-12 Thread xlwang
Hello,
when i run my galaxy instance type:
$ sh run.sh
I get some error like this:
Traceback (most recent call last):
  File "/export/galaxy-dist/lib/galaxy/webapps/galaxy/buildapp.py", line 38, in 
app_factory
from galaxy.app import UniverseApplication
  File "/export/galaxy-dist/lib/galaxy/app.py", line 21, in 
from galaxy.queue_worker import GalaxyQueueWorker
  File "/export/galaxy-dist/lib/galaxy/queue_worker.py", line 10, in 
import galaxy.queues
  File "/export/galaxy-dist/lib/galaxy/queues.py", line 17, in 
from kombu import Exchange, Queue
  File "/export/galaxy-dist/eggs/kombu-3.0.13-py2.7.egg/kombu/__init__.py", 
line 67, in __getattr__
module = __import__(object_origins[name], None, None, [name])
  File "/export/galaxy-dist/eggs/kombu-3.0.13-py2.7.egg/kombu/entity.py", line 
10, in 
from .abstract import MaybeChannelBound
  File "/export/galaxy-dist/eggs/kombu-3.0.13-py2.7.egg/kombu/abstract.py", 
line 12, in 
from .connection import maybe_channel
  File "/export/galaxy-dist/eggs/kombu-3.0.13-py2.7.egg/kombu/connection.py", 
line 24, in 
from kombu import exceptions
  File "/export/galaxy-dist/eggs/kombu-3.0.13-py2.7.egg/kombu/exceptions.py", 
line 12, in 
from amqp import ChannelError, ConnectionError, ResourceError
  File "/export/galaxy-dist/eggs/amqp-1.4.5-py2.7.egg/amqp/__init__.py", line 
32, in 
from .basic_message import Message  # noqa
  File "/export/galaxy-dist/eggs/amqp-1.4.5-py2.7.egg/amqp/basic_message.py", 
line 19, in 
from .serialization import GenericContent
  File "/export/galaxy-dist/eggs/amqp-1.4.5-py2.7.egg/amqp/serialization.py", 
line 33, in 
from .five import int_types, long_t, string, string_t, items
  File "/export/galaxy-dist/eggs/amqp-1.4.5-py2.7.egg/amqp/five.py", line 171, 
in 
librt = ctypes.CDLL('librt.so.1', use_errno=True)
TypeError: __init__() got an unexpected keyword argument 'use_errno'  
 
I have no idea why this happend. How can I fix it?___
Please keep all replies on the list by using "reply all"
in your mail client.  To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
  http://lists.bx.psu.edu/

To search Galaxy mailing lists use the unified search at:
  http://galaxyproject.org/search/mailinglists/