Dear Benoît Meilhac,
In my plugin, I would have to import the workflow, then run it with inputs
listed in the executable command line, and after a successful execution, I
would have to retrieve the outputs generated, then delete the created
workflow and any files related that exist.
The
Hello Benoît,
I remember seeing projects trying to do something similar (store workflows
internally and execute on Galaxy), like http://refinery-platform.org/, so
it could be useful to take a look there too. I've been trying to do
something similar but with the Java interface to the Galaxy API
Sorry for the late response.
Thanks for your help.
On Wed, Jan 4, 2012 at 2:32 PM, Carlos Borroto carlos.borr...@gmail.comwrote:
On Wed, Jan 4, 2012 at 2:25 PM, Ryan ngsbioinformat...@gmail.com wrote:
On Wed, Jan 4, 2012 at 12:04 PM, Langhorst, Brad langho...@neb.com
wrote:
Usha:
...@neb.com
Cc: Usha Reddy usha.reddy...@gmail.com, galaxy-...@bx.psu.edu
galaxy-...@bx.psu.edu
Subject: Re: [galaxy-dev] galaxy command line
On Wed, Jan 4, 2012 at 12:04 PM, Langhorst, Brad langho...@neb.com
wrote:
Usha:
Galaxy is essentially a wrapper around other command line tools
Usha:
Galaxy is essentially a wrapper around other command line tools.
So, while you could probably extract some of its pieces to run on the command
line, I don't know why you would want to.
brad
--
Brad Langhorst
New England Biolabs
langho...@neb.com
From: Usha Reddy
On Wed, Jan 4, 2012 at 12:04 PM, Langhorst, Brad langho...@neb.com wrote:
Usha:
Galaxy is essentially a wrapper around other command line tools.
So, while you could probably extract some of its pieces to run on the
command line, I don't know why you would want to.
I would argue it would
On Wed, Jan 4, 2012 at 2:25 PM, Ryan ngsbioinformat...@gmail.com wrote:
On Wed, Jan 4, 2012 at 12:04 PM, Langhorst, Brad langho...@neb.com wrote:
Usha:
Galaxy is essentially a wrapper around other command line tools.
So, while you could probably extract some of its pieces to run on the
...@neb.com
Cc: Usha Reddy usha.reddy...@gmail.commailto:usha.reddy...@gmail.com,
galaxy-...@bx.psu.edumailto:galaxy-...@bx.psu.edu
galaxy-...@bx.psu.edumailto:galaxy-...@bx.psu.edu
Subject: Re: [galaxy-dev] galaxy command line
On Wed, Jan 4, 2012 at 12:04 PM, Langhorst, Brad
langho
: Usha Reddy usha.reddy...@gmail.com, galaxy-...@bx.psu.edu
galaxy-...@bx.psu.edu
Subject: Re: [galaxy-dev] galaxy command line
On Wed, Jan 4, 2012 at 12:04 PM, Langhorst, Brad langho...@neb.com wrote:
Usha:
Galaxy is essentially a wrapper around other command line tools.
So, while you
