Hi Nik,
the current wrappers are hosted here:
https://github.com/bgruening/galaxytools/tree/master/gatk2
and maintained by Nicola Soranzo, Jim Johnson and me.
The current plan is to realease a final version of GATK2.8 and start
working on GATK3 after that.
I'm in contact the Geraldine Van der Auwera from the GATK devs, we are
trying to generate some Json files which will describe the commandline
interface of all GATK programs, with the aim of generating most of the
wrappers automatically.
If you want to start creating GATK3 wrappers and can't wait longer, I
would recommend to start from the GATK2 wrappers.
Cheers,
Bjoern
Am 21.05.2014 02:25, schrieb Nikhil Joshi:
Hi all,
Is anyone working on (or has already created) wrappers for GATK 3.0?
Specifically, I'm looking for a wrapper for genotypeGVCFs, but it seems
like I would want all the GATK wrappers to be updated. Any help is highly
appreciated!
- Nik.
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