I suppose what I meant to say was that since I was able to add the
metazoa.ensembl.org biomart by modifying the existing biomart xml, would
this not also work for VB's biomart instance? Or would this not be what you
are looking for?
Actually, re-reading your OP, is it that you are asking for galaxy to add
this source to their public instances?
Gus
On Tue, Sep 6, 2011 at 11:54 AM, Daniel Blankenberg d...@bx.psu.edu wrote:
Hi Scott,
For information on adding Datasource tools to Galaxy, please see:
http://wiki.g2.bx.psu.edu/Admin/Internals/Data%20Sources
http://www.ncbi.nlm.nih.gov/pubmed/21531983
If your resource is using software that is already Galaxy-aware, you can
often take an existing xml configuration
(GALAXY_ROOT/tools/data_source/*.xml) and make a copy to modify for your
needs. Please let us know if we can provide additional information.
Thanks for using Galaxy,
Dan
On Sep 4, 2011, at 10:29 AM, Scott Emrich wrote:
Dear team,
There are multiple 3rd party sources to import arthropod vector data
(e.g. BioMart) from our NIH Bioinformatics Resource Center (BRC) VectorBase
into Galaxy, but some are outdated and some of our users would like a direct
source. Given this increase of Galaxy in our vector biology community, what
is the policy for adding a new server to Get Data and is there information
on formatting our results appropriately (i.e., using a REST interface)?
Our NIH BRC server is www.vectorbase.org.
I noticed our sister BRC EuPathDB has made their data available via
http://main.g2.bx.psu.edu, and we have similar developer resources to make
our server compatible; however, I couldn't find this information online
besides addressing this list.
Thanks in advance, and best regards,
- S
---
Scott Emrich, PhD
Scientific Manager, VectorBase
Assistant Professor, Computer Science and Engineering
University of Notre Dame
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--
In science, fact can only mean confirmed to such a degree that it would
be perverse to withhold provisional assent. I suppose that apples might
start to rise tomorrow, but the possibility does not merit equal time in
physics classrooms.
*-Stephen Jay Gould*
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