Re: [galaxy-dev] html output with javascript
Hi Laure,
This is intentional behavior; galaxy sanitizes all html output as a
security measure by default. You can turn this off on your instance by
changing sanitize_all_html to False in your universe_wsgi.ini.
There's a Trello card to track implementation of allowing administrators to
individually pick which tools to trust, which you can see (and vote for, or
follow) here: https://trello.com/c/8iMhKlPX
-Dannon
On Wed, Feb 5, 2014 at 9:44 AM, Laure QUINTRIC laure.quint...@ifremer.frwrote:
Hello galaxy users,
one of my tools returns an html output in which I have links to images and
javascripts.
Images and Javascripts of the dataset_XXX.dat file are located in a
dataset_XXX_files directory. Images are well displayed in galaxy output but
javascripts aren't executed. Even an alert('foo') cannot be retrieved.
Has somebody already experiment this ? In other related posts, it's said
to look at rgenetics fastqc wrapper but no javascript fonctions are called
in the fastqc_report.html.
Thanks,
Laure
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Re: [galaxy-dev] html output with javascript
Hi Dannon,
It works after setting sanitize_all_html to True, thanks a lot.
Laure
Le 05/02/2014 16:42, Dannon Baker a écrit :
Hi Laure,
This is intentional behavior; galaxy sanitizes all html output as a
security measure by default. You can turn this off on your instance by
changing sanitize_all_html to False in your universe_wsgi.ini.
There's a Trello card to track implementation of allowing administrators
to individually pick which tools to trust, which you can see (and vote
for, or follow) here: https://trello.com/c/8iMhKlPX
-Dannon
On Wed, Feb 5, 2014 at 9:44 AM, Laure QUINTRIC
laure.quint...@ifremer.fr mailto:laure.quint...@ifremer.fr wrote:
Hello galaxy users,
one of my tools returns an html output in which I have links to
images and javascripts.
Images and Javascripts of the dataset_XXX.dat file are located in a
dataset_XXX_files directory. Images are well displayed in galaxy
output but javascripts aren't executed. Even an alert('foo') cannot
be retrieved.
Has somebody already experiment this ? In other related posts, it's
said to look at rgenetics fastqc wrapper but no javascript fonctions
are called in the fastqc_report.html.
Thanks,
Laure
_
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http://galaxyproject.org/search/mailinglists/
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Re: [galaxy-dev] HTML output with Javascript
Assuming everything is generated correctly for the html report, what you're probably running into is Galaxy's html sanitization. In your Galaxy instance's universe_wsgi.ini you can set the following option (to false) to disable this: # Sanitize All HTML # By default, all tool output served as 'text/html' will be sanitized # thoroughly. This can be disabled if you have special tools that require # unaltered output. #sanitize_all_html = True -Dannon On Mar 22, 2012, at 7:35 PM, Jose Navas wrote: Hi Galaxy developers, I have a tool that generates an html output which executes some javascript functions that are defined in a *.js file. I put this file under the $output1.files_path but when I display the html file in the galaxy browser, it doesn't executes the Javascript. What can I do to execute Javascripts in the Galaxy browser? Thanks, Jose ___ Please keep all replies on the list by using reply all in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ ___ Please keep all replies on the list by using reply all in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
Re: [galaxy-dev] HTML output with Javascript
Hi Dannon, Thank you for your quick answer. I search in my Galaxy instance's universe_wsgi.ini and I didn't find this option... Where can I add this option? Thanks, Jose Subject: Re: [galaxy-dev] HTML output with Javascript From: dannonba...@me.com Date: Thu, 22 Mar 2012 19:44:05 -0400 CC: galaxy-dev@lists.bx.psu.edu To: josenavasmol...@hotmail.com Assuming everything is generated correctly for the html report, what you're probably running into is Galaxy's html sanitization. In your Galaxy instance's universe_wsgi.ini you can set the following option (to false) to disable this: # Sanitize All HTML # By default, all tool output served as 'text/html' will be sanitized # thoroughly. This can be disabled if you have special tools that require # unaltered output. #sanitize_all_html = True -Dannon On Mar 22, 2012, at 7:35 PM, Jose Navas wrote: Hi Galaxy developers, I have a tool that generates an html output which executes some javascript functions that are defined in a *.js file. I put this file under the $output1.files_path but when I display the html file in the galaxy browser, it doesn't executes the Javascript. What can I do to execute Javascripts in the Galaxy browser? Thanks, Jose ___ Please keep all replies on the list by using reply all in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ ___ Please keep all replies on the list by using reply all in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
Re: [galaxy-dev] HTML output with Javascript
It's in the [app:main] section. See the universe_wsgi.ini.sample file for the exact position-- this file will always be up-to-date with the initial configuration options that might have shown up as you've updated your galaxy instance. -Dannon On Mar 22, 2012, at 7:50 PM, Jose Navas wrote: Hi Dannon, Thank you for your quick answer. I search in my Galaxy instance's universe_wsgi.ini and I didn't find this option... Where can I add this option? Thanks, Jose Subject: Re: [galaxy-dev] HTML output with Javascript From: dannonba...@me.com Date: Thu, 22 Mar 2012 19:44:05 -0400 CC: galaxy-dev@lists.bx.psu.edu To: josenavasmol...@hotmail.com Assuming everything is generated correctly for the html report, what you're probably running into is Galaxy's html sanitization. In your Galaxy instance's universe_wsgi.ini you can set the following option (to false) to disable this: # Sanitize All HTML # By default, all tool output served as 'text/html' will be sanitized # thoroughly. This can be disabled if you have special tools that require # unaltered output. #sanitize_all_html = True -Dannon On Mar 22, 2012, at 7:35 PM, Jose Navas wrote: Hi Galaxy developers, I have a tool that generates an html output which executes some javascript functions that are defined in a *.js file. I put this file under the $output1.files_path but when I display the html file in the galaxy browser, it doesn't executes the Javascript. What can I do to execute Javascripts in the Galaxy browser? Thanks, Jose ___ Please keep all replies on the list by using reply all in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ ___ Please keep all replies on the list by using reply all in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
