Re: [galaxy-dev] jobs submitted to a cluster

2014-06-12 Thread Evan Bollig
Hey Donny, What is the value of keep_completed on your queue (from qmgr -c 'p s')? Could it be that your spool is flushing completed jobs immediately? I ran into issues the other day with libdrmaa requiring at least keep_complete = 60 seconds to properly detect completed jobs and clean up after

Re: [galaxy-dev] jobs submitted to a cluster

2014-06-12 Thread Shrum, Donald C
: [galaxy-dev] jobs submitted to a cluster Hey Donny, What is the value of keep_completed on your queue (from qmgr -c 'p s')? Could it be that your spool is flushing completed jobs immediately? I ran into issues the other day with libdrmaa requiring at least keep_complete = 60 seconds to properly

Re: [galaxy-dev] jobs submitted to a cluster

2014-06-12 Thread Evan Bollig
To: Shrum, Donald C Cc: galaxy-dev@lists.bx.psu.edu Subject: Re: [galaxy-dev] jobs submitted to a cluster Hey Donny, What is the value of keep_completed on your queue (from qmgr -c 'p s')? Could it be that your spool is flushing completed jobs immediately? I ran into issues the other day

Re: [galaxy-dev] jobs submitted to a cluster

2014-06-12 Thread John Chilton
To: Shrum, Donald C Cc: galaxy-dev@lists.bx.psu.edu Subject: Re: [galaxy-dev] jobs submitted to a cluster Hey Donny, What is the value of keep_completed on your queue (from qmgr -c 'p s')? Could it be that your spool is flushing completed jobs immediately? I ran into issues the other day

Re: [galaxy-dev] jobs submitted to a cluster

2014-06-12 Thread Shrum, Donald C
@lists.bx.psu.edu Subject: Re: [galaxy-dev] jobs submitted to a cluster My guess is Galaxy is deleting the directory because it believe the job is in error because of some communication problem while polling your DRM via DRMAA - Galaxy thinks the job has failed before it has even been run. You