Re: [galaxy-dev] manage_db.sh upgrade fails after fresh install of Galaxy

2012-01-03 Thread Nate Coraor
Yes, and something else strange is happening here. You mentioned that you ran manage_db.sh upgrade after starting the server. You shouldn't need to run 'sh manage_db.sh upgrade' after starting Galaxy on an empty database, since Galaxy automatically runs the migration on first run. Are you doi

Re: [galaxy-dev] manage_db.sh upgrade fails after fresh install of Galaxy

2012-01-03 Thread Greg Von Kuster
Your database is not cleanly dropped when you start up your Galaxy server - notice all of the migration scripts that fail because table columns, etc already exist. Here's an example: > 0012_user_address DEBUG 2011-12-14 15:15:12,085 Adding column 'deleted' to > request_type table failed: (Prog

Re: [galaxy-dev] manage_db.sh upgrade fails after fresh install of Galaxy

2012-01-03 Thread Langhorst, Brad
Iry: I've run this recently on postgres without any trouble. Maybe the managedb_sh script is working on a different database than galaxy_1, or maybe there is some leftover information in galaxy_1? brad On 1/3/12 6:59 AM, "Iry Witham" wrote: >Hi Nate, > > I do not create any tables ma

Re: [galaxy-dev] manage_db.sh upgrade fails after fresh install of Galaxy

2012-01-03 Thread Iry Witham
Hi Nate, I do not create any tables manually. I simply create the database and setup users and roles. I do the following: initdb ­D /local/postgresql/data pg_ctl ­D /local/postgresql/data ­I /local/postgresql/pgsql.log start createdb galaxy_1 Sudo su - postgres pgsql galaxy_1 CREATE U

Re: [galaxy-dev] manage_db.sh upgrade fails after fresh install of Galaxy

2012-01-03 Thread Nate Coraor
On Dec 21, 2011, at 2:49 PM, Iry Witham wrote: > I have installed a new Galaxy server utilizing the November 18,2011 > distribution on a SLES 11 VM and cannot get it to launch cleanly. I am > running postgreSQL v. 8.3.9 to create my database. Once the database is > created and running I launc