Heya, Andy Galaxy hasn't been designed to be loaded in an iframe yet.
Currently, the javascript in Galaxy makes use of the window variable top - which points to the highest browser window in the DOM. There are many instances where we rely on both 'top' and the link target '_top' to control the iframes used inside the platform. In your implementation, top won't point to the Galaxy frame - but to the frame you've created. This can lead to pages/features that won't load (and fail silently unfortunately). We are currently working to remove our use of iframes within the platform which will help with embedding Galaxy into a frame. In the meantime, you may be able to alter those references to top to point to parent (which is context dependent) or to a named frame (naming the outer Galaxy frame and using that as a link target and replacement for top). Hope that helps. (with apologies to Andy for missing the mailing list in my first reply) On Thu, Oct 10, 2013 at 7:56 AM, Andy Saurin <andrew.sau...@univ-amu.fr>wrote: > Hi all, > > I really can't understand why this should be, but in recent versions of > Galaxy if you have a simple html page with an iframe embedding Galaxy, you > loose the masthead (no login, workflow etc) and the history panel no longer > works. > > eg (newer Galaxy Versions) > > <iframe src="https://galaxy.cbio.mskcc.org/"; width="800px" > height="600px"></iframe> > <iframe src="https://galaxy.cbio.mskcc.org/"; width="800px" > height="600px"></iframe> > > You can see the problems, whereas older versions of galaxy show no > problems: > > <iframe src="http://galaxy.berkeleybop.org:8080/"; width="800px" > height="600px"></iframe> > > > What could be causing this so that I can try to make amends? > > Thanks > Andy > > > ___________________________________________________________ > Please keep all replies on the list by using "reply all" > in your mail client. To manage your subscriptions to this > and other Galaxy lists, please use the interface at: > http://lists.bx.psu.edu/ > > To search Galaxy mailing lists use the unified search at: > http://galaxyproject.org/search/mailinglists/ >
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