Hi Ann, Are you able to share more of the stack trace, or a method for reproducing this? I'm assuming it's a local instance you're talking about -- what revision are you running, etc?
Thanks! -Dannon On Sat, May 18, 2013 at 3:12 PM, Ann Holtz-Morris, M.S. < aholtzmor...@chori.org> wrote: > Hi, > I used the SAM to FASTQ tool to divide78 lines of Illimina paired end > sequences in SAM format to FASTQ format. The read 2 data set works fine, > and I used the FASTQ masker and then FASTQ to FASTA tools. > > I went to repeat those steps with the the read 1 data set. It errors with: > > Error executing tool: maximum recursion depth exceeded while calling a > Python object. > > Thinking maybe the format was corrupted, I ran FASTQ groomer. Same result: > > Error executing tool: maximum recursion depth exceeded while calling a > Python object. > > Thinking the SAM to FASTQ had a problem, I repeated it. Same result: > > Error executing tool: maximum recursion depth exceeded while calling a > Python object. > > You get thepicture. Anything I try with this data gives the same error. > > > When I googled the error, the top results were all about large data sets, > but this isn't a large set. > > Any help greatly appreciated, > Ann > > Thanks for your help. > CONFIDENTIALITY NOTICE: This electronic message is intended to be for the > use only of the named recipient, and may contain information that is > confidential or privileged. If you are not the intended recipient, you are > hereby notified that any disclosure, copying, distribution or use of the > contents of this message is strictly prohibited. If you have received this > message in error or are not the named recipient, please notify us > immediately by contacting the sender at the electronic mail address noted > above, and delete and destroy all copies of this message. Thank you. > ______________________________**_____________________________ > Please keep all replies on the list by using "reply all" > in your mail client. To manage your subscriptions to this > and other Galaxy lists, please use the interface at: > http://lists.bx.psu.edu/ > > To search Galaxy mailing lists use the unified search at: > > http://galaxyproject.org/**search/mailinglists/<http://galaxyproject.org/search/mailinglists/> >
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