Thanks for the pointer Ross. It was really useful. I also found more
information about multiple output datasets on the wiki:
http://wiki.g2.bx.psu.edu/Admin/Tools/Multiple%20Output%20Files?highlight=%28dataset%29
I plan on writing a script that renames the output of the Grinder tool I
am
Hi,
I too would be interested in knowing how to handle tools that might
generate multiple output files for the Grinder wrapper I am developing.
Any news on this? Has a ticket been recorded?
How about when the tool generate an number of files that cannot be
determined from the values the
The BWA tool in NGS mapping does just what you want, just for inputs. The
general idea is to use a conditional element and define your extra output in
a when block.
John Duddy
Sr. Staff Software Engineer
Illumina, Inc.
9885 Towne Centre Drive
San Diego, CA 92121
Tel: 858-736-3584
E-mail:
It seems that the conditional element can only be used WITHIN a data
element in the outputs. But that won't do what I want. I know that you can
use conditional in the inputs element in that way, but it will NOT work
that way in the outputs element. However, I have found a way to do what I
want
