Again, solved my own problem.
diff -r 949e4f5fa03a tools/plotting/scatterplot.py
--- a/tools/plotting/scatterplot.py Mon Aug 29 14:42:04 2011 -0400
+++ b/tools/plotting/scatterplot.py Wed Oct 12 10:35:58 2011 -0400
@@ -20,7 +20,8 @@
xlab = sys.argv[6]
ylab = sys.argv[7]
- matrix = []
+ xarray = []
+ yarray = []
skipped_lines = 0
first_invalid_line = 0
invalid_value = ''
@@ -57,12 +58,13 @@
first_invalid_line = i+1
if valid:
- matrix.append( row )
+ xarray.append ( row[0] )
+ yarray.append ( row[1] )
if skipped_lines < i:
try:
r.pdf( out_fname, 8, 8 )
- r.plot( array( matrix ), type="p", main=title, xlab=xlab,
ylab=ylab, col="blue", pch=19 )
+ r.plot( xarray, yarray, type="p", main=title, xlab=xlab,
ylab=ylab, col="blue", pch=19 )
r.dev_off()
except Exception, exc:
stop_err( "%s" %str( exc ) )
David
On Oct 6, 2011, at 10:16 AM, David Hoover wrote:
> Hi,
>
> The scatterplot tool is broken in the distributed version. It works on the
> main Galaxy server, but on our local installation it gives this error:
>
> An error occurred running this job:Warning messages:
> 1: In min(x) : no non-missing arguments to min; returning Inf
> 2: In max(x) : no non-missing arguments to max; returning -Inf
> 3: In min(x) : no non-missing arguments to min; returning Inf
> 4: In max(x) : no non-missing arguments to max; re
>
> Any ideas?
>
> David Hoover
> Helix Systems Staff
> SCB/CIT/NIH
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