Re: [galaxy-dev] sysadmin help

[Eric Rasche]

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I believe there are "select first" and "select last" tools in the "Text
Utilites" section (i.e., head and tail wrappers)
you might try those...


On 02/06/2014 01:37 PM, Shrum, Donald C wrote:
> I have a galaxy server set up, running off of our HPC cluster file system.  
> I'd like to submit a
simple job to test my settings with our moab scheduler.
>
> Could someone point me to the easiest possible example of uploading
and running a job... possible an example a sysadmin with limited
knowledge could follow ;)
>
> Thanks,
> Don
> FSU RCC
>
>
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- -- 
Eric Rasche
Programmer II
Center for Phage Technology
Texas A&M University
College Station, TX 77843
404-692-2048 
e...@tamu.edu 
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Re: [galaxy-dev] sysadmin help

[Nate Coraor]

Hi Donny,

Thanks for the heads up about the broken link, I've fixed it. Other than
that, are you running in to problems connecting Galaxy to your existing
cluster?

--nate


On Tue, Jan 28, 2014 at 9:29 PM, Shrum, Donald C wrote:

> Hi all,
>
> I could use a little basic help.  I'm setting up a proof of concept galaxy
> server that will run in conjunction with our HPC here at FSU.  Ultimately
> this will serve as a template where we will allow some users to run galaxy
> on a VM and use it as a mechanism for submitting/managing jobs on our
> cluster.
>
> I've installed Galaxy on a VM that mounts our HPC file system and managed
> to import an ecoli .fa file.
>
> My plan was to run bowtie2 on our HPC.
> https://rcc.fsu.edu/software/bowtie2
>
> Disclaimer... I'm a sysadmin and other than compiling software my
> knowledge in bioinformatics is sorely lacking ;)
>
> I'm looking at the docs here
> https://wiki.galaxyproject.org/Admin/Config/Performance/Cluster#PBS
> I get a 404 for details on Torque -
> http://www.clusterresources.com/pages/products/torque-resource-manager.php
>
> Any help would be greatly appreciated.  Additionally, if my intended use
> for Galaxy seems out of the scope of what would be useful, please let me
> know.
>
> Thanks,
> Donny Shrum
> FSU Research Computing Center
>
>
>
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> Please keep all replies on the list by using "reply all"
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