Re: [galaxy-dev] value_label tool input param attribute doesn't work as documented

2011-09-07 Thread Leandro Hermida 
Hi again,

Sorry had to check what exactly was not working, the value_label
attribute appears to not work when trying to reference a label from a
dynamic_options driven input parameter.

regards,
Leandro

On Wed, Aug 24, 2011 at 7:23 PM, Kanwei Li kan...@gmail.com wrote:
 Hi Leandro,
 I tested this on my instance and the example you gave did give me the
 correct string: Human (hg18). Do you still have this problem? If so, can you
 provide an example where it still behaves incorrectly?
 Thanks,
 K

 On Thu, Jul 14, 2011 at 4:16 AM, Leandro Hermida
 soft...@leandrohermida.com wrote:

 Hi,

 Looking at the example on the Tool Config Syntax wiki page:

 Example

 Assume that the tool includes an input parameter named database which is
 a select list ( e.g., assume the following inputs ):

 Toggle line numbers

1 inputs


2 param format=tabular name=input type=data label=Input
 stuff/


3 param type=select name=database label=Database


4 option value=alignseq.locHuman (hg18)/option


5 option value=faseq.locFly (dm3)/option


6 /param


7 /inputs


 Assume that the user selects the first option in the $database select
 list. Then the following will ensure that the tool produces a tabular data
 set whose associated history item has the label Blat on Human (hg18).

 Toggle line numbers

1 outputs


2 data format=input name=output label=Blat on
 ${database.value_label} /


3 /outputs



 It shows that .value_label attribute should produce the string in between
 the option tags, not the actual value.

 Why does this not work? When I use it it produces the value, or am I doing
 something wrong?

 regards,
 Leandro


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Re: [galaxy-dev] value_label tool input param attribute doesn't work as documented

2011-08-24 Thread Kanwei Li 
Hi Leandro,

I tested this on my instance and the example you gave did give me the
correct string: Human (hg18). Do you still have this problem? If so, can you
provide an example where it still behaves incorrectly?

Thanks,

K

On Thu, Jul 14, 2011 at 4:16 AM, Leandro Hermida soft...@leandrohermida.com
 wrote:

 Hi,

 Looking at the example on the Tool Config Syntax wiki page:
 Example

 Assume that the tool includes an input parameter named database which is
 a select list ( e.g., assume the following inputs ):
  Toggle line 
 numbershttp://wiki.g2.bx.psu.edu/Admin/Tools/Tool%20Config%20Syntax#

1 
 http://wiki.g2.bx.psu.edu/Admin/Tools/Tool%20Config%20Syntax#CA-4197fe3d76b4282c0f9aa2576fbdec6550c3174f_1
  inputs
2 
 http://wiki.g2.bx.psu.edu/Admin/Tools/Tool%20Config%20Syntax#CA-4197fe3d76b4282c0f9aa2576fbdec6550c3174f_2
  param format=tabular name=input type=data label=Input stuff/
3 
 http://wiki.g2.bx.psu.edu/Admin/Tools/Tool%20Config%20Syntax#CA-4197fe3d76b4282c0f9aa2576fbdec6550c3174f_3
  param type=select name=database label=Database
4 
 http://wiki.g2.bx.psu.edu/Admin/Tools/Tool%20Config%20Syntax#CA-4197fe3d76b4282c0f9aa2576fbdec6550c3174f_4
  option value=alignseq.loc*Human (hg18)*/option
5 
 http://wiki.g2.bx.psu.edu/Admin/Tools/Tool%20Config%20Syntax#CA-4197fe3d76b4282c0f9aa2576fbdec6550c3174f_5
  option value=faseq.locFly (dm3)/option
6 
 http://wiki.g2.bx.psu.edu/Admin/Tools/Tool%20Config%20Syntax#CA-4197fe3d76b4282c0f9aa2576fbdec6550c3174f_6
  /param
7 
 http://wiki.g2.bx.psu.edu/Admin/Tools/Tool%20Config%20Syntax#CA-4197fe3d76b4282c0f9aa2576fbdec6550c3174f_7
  /inputs

 Assume that the user selects the first option in the $database select
 list. Then the following will ensure that the tool produces a tabular data
 set whose associated history item has the label Blat on *Human (hg18)*.
 Toggle line 
 numbershttp://wiki.g2.bx.psu.edu/Admin/Tools/Tool%20Config%20Syntax#

1 
 http://wiki.g2.bx.psu.edu/Admin/Tools/Tool%20Config%20Syntax#CA-c1ccb05e35e84df1d17f7b92455ff66b9d18618b_1
  outputs
2 
 http://wiki.g2.bx.psu.edu/Admin/Tools/Tool%20Config%20Syntax#CA-c1ccb05e35e84df1d17f7b92455ff66b9d18618b_2
  data format=input name=output label=Blat on 
 ${database.value_label} /
3 
 http://wiki.g2.bx.psu.edu/Admin/Tools/Tool%20Config%20Syntax#CA-c1ccb05e35e84df1d17f7b92455ff66b9d18618b_3
  /outputs

 It shows that .value_label attribute should produce the string in between
 the option tags, not the actual value.

 Why does this not work? When I use it it produces the value, or am I doing
 something wrong?

 regards,
 Leandro


 ___
 Please keep all replies on the list by using reply all
 in your mail client.  To manage your subscriptions to this
 and other Galaxy lists, please use the interface at:

  http://lists.bx.psu.edu/

___
Please keep all replies on the list by using reply all
in your mail client.  To manage your subscriptions to this
and other Galaxy lists, please use the interface at:

  http://lists.bx.psu.edu/