Hello Rui,
The problems you are describing have to do with the format of the input
wig dataset.
It looks as if you have corrected the chromosome names to be identical
to the reference genome build used (required). There are options to
overcome the other issues:
1. verify that your data
Hi Jennifer,
Thanks for the note.
A related question, do we have a 'ucsc_tool'? I sometimes saw the warning
of failed dependency on ucsc_tool, but I'm not sure what it is. I found
that there are many binary/script utilities:
https://github.com/adamlabadorf/ucsc_tools
should I install all these
Hi Rui,
This error probably means that the binaries from UCSC are not installed
or the path to the tools is incorrect. ucsc_tools is a package
requirement for the tools that use these binaries in the .xml portion of
the wrapper (for those in the dist/devteam).
If you are running your own
Hi Nate,
Thanks for the note!
So may I ask whether this is expected? I mean, the len_file_path points to
tool-data/..., which is right inside galaxy-dist, and it is natural. I
didn't realize
that this path is relative to the individual job working dir. Are there any
other
similar cases?
Best,
On Sat, Nov 16, 2013 at 12:27 PM, ruiwang.sz ruiwang...@gmail.com wrote:
Hi All,
I‘m seeing some weird error messages...I googled but didn't see anything
useful:
So, it is during the wigToBigwig conversion:
Dataset generation errors
Dataset 47: Wig/BedGraph-to-bigWig on data 43
Tool
