I'm only guessing here, but maybe the issue is that the parameter names
are all the same (namely "model"). Did you try with only unique names?
Especially this one:
<param name="models" type="select" label="model source"
help="History or installed models?" value="local">
should get it's own name.
Sarah
On 02/06/2012 03:38 PM, Holger Klein wrote:
Dear all,
I'm working on a tool wrapper which for a sequence scoring tool.
It's supposed to score sequences either using a library installed to
galaxy (tool-data/models.loc) or datasets from the user history.
I tried to implement this behavior using the<conditional> /<when
value> mechanism, simplified code follows below.
Using locally installed models (from models.loc) fails with "NotFound:
cannot find 'models'", although in the details view of the failed tool
run "model database" points to the right file.
Using the model file from the history works.
Defining _only_ locally installed models from models.loc also works
(removing the<conditional> stuff and leaving only the part inside<when
value='local'> </when>).
The commandline might look a bit strange but is correct.
Can anybody spot what is going wrong here?
Regards,
Holger
--
<command>
calcModels --scoreFasta -- --fa $fasta_in --bgFa $fasta_background
--models $models> $output_table
</command>
<inputs>
<param format="fasta" name="fasta_in" type="data" label="Input Fasta
File" />
<param format="fasta" name="fasta_background" type="data"
label="Background Fasta File" />
<conditional name="ModelSource">
<param name="models" type="select" label="model source"
help="History or installed models?" value="local">
<option value="local">Locally installed models</option>
<option value="history">Models from your history</option>
</param>
<when value="local">
<param name="models" type="select" label="model database">
<options from_file="models.loc">
<column name="name" index="1"/>
<column name="value" index="2"/>
</options>
</param>
</when>
<when value="history">
<param name="models" type="data" format="tabular" label="model
database" />
</when>
</conditional>
</inputs>
___________________________________________________________
Please keep all replies on the list by using "reply all"
in your mail client. To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
http://lists.bx.psu.edu/
