[galaxy-dev] Plot-bamstats

2015-10-16 Thread Jose Juan Almagro Armenteros
Hello, I have just installed the tool "samtools_stats" from the toolshed. In the synopsis says: "This tool runs the samtools stats command in the SAMtools toolkit, collecting statistics from BAM files. The output can be visualized using plot-bamstat ", but I haven't found any tool to visualize it

Re: [galaxy-dev] Plot-bamstats

2015-10-16 Thread Jochen Bick
Hej Jose, according to this https://wiki.galaxyproject.org/Events/GCC2015?action=AttachFile=get=S6_T1_interactive-environments.pdf http://bam.iobio.io/ is coming soon for galaxy. Cheers Jochen On 16.10.2015 15:36, Jose Juan Almagro Armenteros wrote: > Hello, > > I have just installed the

Re: [galaxy-dev] Plot-bamstats

2015-10-16 Thread Bjoern Gruening
On 16.10.2015 16:08, Jochen Bick wrote: Hej Jose, according to this https://wiki.galaxyproject.org/Events/GCC2015?action=AttachFile=get=S6_T1_interactive-environments.pdf http://bam.iobio.io/ is coming soon for galaxy. Ah, I feel the pressure :) Cheers Jochen On 16.10.2015 15:36, Jose

[galaxy-dev] Fwd: Seeking Help with Galaxy

2015-10-16 Thread Anton Nekrutenko
Tendai: I'm forwarding your e-mail to the dev forum. This is the best place to ask these kinds of questions. a. -- Forwarded message -- From: Mutangadura, Tendai Date: Thu, Oct 15, 2015 at 7:17 PM Subject: Seeking Help with Galaxy To: "an...@bx.psu.edu"

Re: [galaxy-dev] CloudMan launch error

2015-10-16 Thread Aaron Darling
Thanks for the reply Enis, I had some off-list discussion with Simon Gladman about this. Simon indicated it seems that OpenStack security groups are not propagating to worker nodes at startup. Manually configuring the worker node security group and then rebooting the master appears to be a