Re: [galaxy-dev] How does one run Javascript or HTML as a tool? the complete message ignore previous

2015-12-15 Thread Carl Eberhard
Give this a try: *registry.MDA_zip* And if that doesn't work: *MDA_zip* Finally, try this (which won't return true for subclasses of MDA_zip): *MDA_zip* (Sorry - initially sent this to Bob only) On Mon, Dec 14, 2015 at 4:14 PM, wrote: > Thank you Carl for the

Re: [galaxy-dev] How does one run Javascript or HTML as a tool? the complete message ignore previous

2015-12-14 Thread Carl Eberhard
Hi, Bob There are a number of ways to visualize data in Galaxy, so let's settle on some terminology first for the three major ways: * *display applications*: these are definitions of external websites that can fetch galaxy datasets and display them in their visualization applications. Examples

Re: [galaxy-dev] How does one run Javascript or HTML as a tool? the complete message ignore previous

2015-12-14 Thread Martin Čech
Hi all, I transformed the awesome tutorial Carl wrote into a wiki page here: https://wiki.galaxyproject.org/Develop/Visualizations Please contribute if you feel like it. M. On Mon, Dec 14, 2015 at 4:17 PM wrote: > Thank you Carl for the excellent write-up. It could

Re: [galaxy-dev] How does one run Javascript or HTML as a tool? the complete message ignore previous

2015-12-14 Thread rbrown1422
Thank you Carl for the excellent write-up. It could serve as a visualization plugin tutorial. However, I am still not able to get the visualization icon to appear, see the attachment 2. I feel if I get the icon to show it will all come together. A couple questions followed by file dumps and

Re: [galaxy-dev] How does one run Javascript or HTML as a tool? the complete message ignore previous

2015-12-12 Thread rbrown1422
Thank you Eric, But I want to be clear after spending 5 days, reading many Galaxy wiki links, looking at samples, and with help from others trying to get this to work. I have written many tools but never tried to display a unique datatype before. Below is a series of questions and steps I