Re: [galaxy-dev] Tmhmm and signal P

2015-11-15 Thread Peter Cock
On Fri, Nov 13, 2015 at 11:08 AM, Peter Cock wrote: > On Fri, Nov 13, 2015 at 10:40 AM, Olivier CLAUDE wrote: >> >> Do anybody knows where i can find WolFPSORT? The >> website semms to be down for a while now and I am not >> able to find it

Re: [galaxy-dev] Tmhmm and signal P

2015-11-13 Thread Olivier CLAUDE
laxy-...@lists.bx.psu.edu> Objet : Re: [galaxy-dev] Tmhmm and signal P On Thu, Nov 12, 2015 at 4:24 PM, Olivier CLAUDE <o.cla...@outlook.fr> wrote: > I followed the instuctions given by peter and signalp works with galaxy! > Thanks a lot! > Do I try the same for tmhmm2 and promot

Re: [galaxy-dev] Tmhmm and signal P

2015-11-13 Thread Peter Cock
On Fri, Nov 13, 2015 at 10:40 AM, Olivier CLAUDE wrote: > Hello, > > This is working! For signlaP and promoter at least. > Good. > I still got this weird error with tmhmm ("no output from tmhmm") and I can't > figure what's wrong . > The message "no output from tmhmm" is

Re: [galaxy-dev] Tmhmm and signal P

2015-11-12 Thread Björn Grüning
Hi Olivier, you need to have signalp in version 3. You have installed it already and it is now on your $PATH? > Signal P: with v3.0: it can’t localize it (signal not found) (I can’t even > launch it in command line) What is the error if you run it on command line? Ciao, Bjoern > >

Re: [galaxy-dev] Tmhmm and signal P

2015-11-12 Thread Olivier CLAUDE
: Olivier CLAUDE <o.cla...@outlook.fr> Cc : 'galaxy-dev' <galaxy-...@lists.bx.psu.edu> Objet : Re: [galaxy-dev] Tmhmm and signal P Hi Olivier, you need to have signalp in version 3. You have installed it already and it is now on your $PATH? > Signal P: with v3.0: it can’t loca

Re: [galaxy-dev] Tmhmm and signal P

2015-11-12 Thread Peter Cock
Hi Olivier, On Thu, Nov 12, 2015 at 1:03 PM, Olivier CLAUDE wrote: > Hi Björn! > > I do have signalP 3 , it's installed and on the path. Good. It is a shame that CBS use a proprietary license which forbids redistribution and packaging - otherwise I could have tried to

Re: [galaxy-dev] Tmhmm and signal P

2015-11-12 Thread Olivier CLAUDE
s Galaxy considered as another user? I installed it as a simple user, to avoid all the problems with the rights with the root. Thanks again, Olivier -Message d'origine- De : Peter Cock [mailto:p.j.a.c...@googlemail.com] Envoyé : jeudi 12 novembre 2015 14:22 À : Olivier CLAUDE

Re: [galaxy-dev] Tmhmm and signal P

2015-11-12 Thread Peter Cock
On Thu, Nov 12, 2015 at 4:24 PM, Olivier CLAUDE wrote: > I followed the instuctions given by peter and signalp works with galaxy! > Thanks a lot! > Do I try the same for tmhmm2 and promoter2? > Thanks a lot again! > > Olivier Our notes from installing tmhmm2: TMHMM arrives