Re: [galaxy-dev] per-tool job resource defaults

2016-03-21 Thread John Chilton
This mapping is not automatic - you need to write a small Python method to take these parameters specified by the user and map them to your cluster parameters. These methods are called dynamic job destinations and described on the wiki at:

Re: [galaxy-dev] per-tool job resource defaults

2016-03-13 Thread Stephan Oepen
many thanks for taking the time to answer my query, gildas! > In your job_conf.xml, you can set per tool a destination. i had realized that much (sending some of our tools to SLURM, running others on the local node), but i had failed to realize that one can of course have /multiple/ SLURM

Re: [galaxy-dev] per-tool job resource defaults

2016-03-13 Thread Gildas Le Corguillé
Hi Stephan, I will just quickly answer to your last question. Because, I’m not sure to understand the first part of your message or take the time to :P > i am hoping i am overlooking something :-). is there a way to define > job resource defaults on a per-tool basis? Perhaps, I didn’t