[galaxy-dev] January 13, 2015 Galaxy Distribution

2015-01-13 Thread Jennifer Hillman-Jackson
*January 13, 2015 Galaxy Distribution* https://wiki.galaxyproject.org/News/2014_01_13_Galaxy_Distribution [image: width=175] http://getgalaxy.org/ *Complete News Brief http://wiki.galaxyproject.org/DevNewsBriefs/2015_01_13* Security Several *critical* security vulnerabilities were recently

Re: [galaxy-dev] Data manager .loc file not installing in correct place

2015-01-13 Thread Daniel Blankenberg
Hi Jeremy, I just installed and tried the data manager and it looks to be working. Have you changed any of these settings in your galaxy.ini file: # Data manager configuration options # Allow non-admin users to view available Data Manager options #enable_data_manager_user_view = False # File

Re: [galaxy-dev] FastQC wrapper not seeing files at gzipped

2015-01-13 Thread Ryan G
Agreed. On Mon, Jan 12, 2015 at 10:24 PM, Peter Cock p.j.a.c...@googlemail.com wrote: Hi Ryan, That is the workaround I am using, which means keeping an uncompressed copy of the FASTQ file on our main storage from where Galaxy can see it (for people to use within their histories). From a

[galaxy-dev] Unable to get data from UCSC

2015-01-13 Thread Anna Terry
Hi, I am having lots of problems with the get data tools installed on our local galaxy server, I'll start with just one. With the UCSC Main one, I am unable to send data back to galaxy, when I click Send query to Galaxy nothing happens, the button is unresponsive. This is in contrast to when I

[galaxy-dev] galaxy and torque - resource allocation

2015-01-13 Thread Fernandez Edgar
Hello gents, Hope everyone had a great holiday break! Wish you guys all the best for 2015! I have a couple of questions about how resources (CPU and memory) is allocated when you have a galaxy and torque installation. So I've setup torque with some default and maximum amount of CPU and memory